Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2009-11-30 15:52:47 UTC
Update Date2020-02-26 21:38:28 UTC
HMDB IDHMDB0013314
Secondary Accession Numbers
  • HMDB13314
Metabolite Identification
Common NameTricosanoylglycine
DescriptionTricosanoylglycine is an acylglycine with C-23 fatty acid group as the acyl moiety. Acylglycines 1 possess a common amidoacetic acid moiety and are normally minor metabolites of fatty acids. Elevated levels of certain acylglycines appear in the urine and blood of patients with various fatty acid oxidation disorders. They are normally produced through the action of glycine N-acyltransferase which is an enzyme that catalyzes the chemical reaction: acyl-CoA + glycine ↔ CoA + N-acylglycine.
Structure
Data?1582753108
Synonyms
ValueSource
Acylglycine c:23HMDB
2-[(1-Hydroxytricosylidene)amino]acetateGenerator
Chemical FormulaC25H49NO3
Average Molecular Weight411.6615
Monoisotopic Molecular Weight411.371244439
IUPAC Name2-tricosanamidoacetic acid
Traditional Nametricosanamidoacetic acid
CAS Registry NumberNot Available
SMILES
CCCCCCCCCCCCCCCCCCCCCCC(=O)NCC(O)=O
InChI Identifier
InChI=1S/C25H49NO3/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-24(27)26-23-25(28)29/h2-23H2,1H3,(H,26,27)(H,28,29)
InChI KeyRDUKYODUVJPRLK-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as n-acyl-alpha amino acids. N-acyl-alpha amino acids are compounds containing an alpha amino acid which bears an acyl group at its terminal nitrogen atom.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentN-acyl-alpha amino acids
Alternative Parents
Substituents
  • N-acyl-alpha-amino acid
  • Fatty amide
  • N-acyl-amine
  • Fatty acyl
  • Carboxamide group
  • Secondary carboxylic acid amide
  • Carboxylic acid
  • Monocarboxylic acid or derivatives
  • Carbonyl group
  • Organonitrogen compound
  • Organooxygen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Organopnictogen compound
  • Organic oxygen compound
  • Organic nitrogen compound
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility5.1e-05 g/LALOGPS
logP8.82ALOGPS
logP8.26ChemAxon
logS-6.9ALOGPS
pKa (Strongest Acidic)4.05ChemAxon
pKa (Strongest Basic)-1.7ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area66.4 ŲChemAxon
Rotatable Bond Count23ChemAxon
Refractivity122.09 m³·mol⁻¹ChemAxon
Polarizability54.83 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+209.76631661259
DarkChem[M-H]-207.13631661259
DeepCCS[M+H]+205.71830932474
DeepCCS[M-H]-203.16830932474
DeepCCS[M-2H]-236.37130932474
DeepCCS[M+Na]+212.16730932474
AllCCS[M+H]+220.132859911
AllCCS[M+H-H2O]+218.132859911
AllCCS[M+NH4]+221.932859911
AllCCS[M+Na]+222.532859911
AllCCS[M-H]-206.732859911
AllCCS[M+Na-2H]-208.932859911
AllCCS[M+HCOO]-211.632859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.10.26 minutes32390414
Predicted by Siyang on May 30, 202228.4846 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20222.03 minutes32390414
AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid48.8 seconds40023050
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid3747.7 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid698.5 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid304.5 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid333.1 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid736.0 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid1191.8 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid1148.4 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)131.7 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid2663.7 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid762.2 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid2336.5 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid967.1 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid588.3 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate794.2 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA567.1 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water8.4 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
TricosanoylglycineCCCCCCCCCCCCCCCCCCCCCCC(=O)NCC(O)=O4110.6Standard polar33892256
TricosanoylglycineCCCCCCCCCCCCCCCCCCCCCCC(=O)NCC(O)=O3055.3Standard non polar33892256
TricosanoylglycineCCCCCCCCCCCCCCCCCCCCCCC(=O)NCC(O)=O3284.7Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Tricosanoylglycine,1TMS,isomer #1CCCCCCCCCCCCCCCCCCCCCCC(=O)NCC(=O)O[Si](C)(C)C3300.5Semi standard non polar33892256
Tricosanoylglycine,1TMS,isomer #2CCCCCCCCCCCCCCCCCCCCCCC(=O)N(CC(=O)O)[Si](C)(C)C3327.6Semi standard non polar33892256
Tricosanoylglycine,2TMS,isomer #1CCCCCCCCCCCCCCCCCCCCCCC(=O)N(CC(=O)O[Si](C)(C)C)[Si](C)(C)C3356.6Semi standard non polar33892256
Tricosanoylglycine,2TMS,isomer #1CCCCCCCCCCCCCCCCCCCCCCC(=O)N(CC(=O)O[Si](C)(C)C)[Si](C)(C)C3286.4Standard non polar33892256
Tricosanoylglycine,2TMS,isomer #1CCCCCCCCCCCCCCCCCCCCCCC(=O)N(CC(=O)O[Si](C)(C)C)[Si](C)(C)C3327.4Standard polar33892256
Tricosanoylglycine,1TBDMS,isomer #1CCCCCCCCCCCCCCCCCCCCCCC(=O)NCC(=O)O[Si](C)(C)C(C)(C)C3524.5Semi standard non polar33892256
Tricosanoylglycine,1TBDMS,isomer #2CCCCCCCCCCCCCCCCCCCCCCC(=O)N(CC(=O)O)[Si](C)(C)C(C)(C)C3575.9Semi standard non polar33892256
Tricosanoylglycine,2TBDMS,isomer #1CCCCCCCCCCCCCCCCCCCCCCC(=O)N(CC(=O)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3840.9Semi standard non polar33892256
Tricosanoylglycine,2TBDMS,isomer #1CCCCCCCCCCCCCCCCCCCCCCC(=O)N(CC(=O)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3578.3Standard non polar33892256
Tricosanoylglycine,2TBDMS,isomer #1CCCCCCCCCCCCCCCCCCCCCCC(=O)N(CC(=O)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3516.8Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Tricosanoylglycine GC-MS (Non-derivatized) - 70eV, Positivesplash10-00rl-8975000000-de4dc1fe6478a26071c62017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Tricosanoylglycine GC-MS (1 TMS) - 70eV, Positivesplash10-00di-9331100000-2c93282b63f2004bea752017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Tricosanoylglycine GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Tricosanoylglycine 10V, Positive-QTOFsplash10-03dr-6009600000-956d5d8dd4576f94028f2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Tricosanoylglycine 20V, Positive-QTOFsplash10-0a6r-9105000000-937508d86d773a8e1bdd2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Tricosanoylglycine 40V, Positive-QTOFsplash10-056r-9322000000-daf067fff4fe2c0f90642017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Tricosanoylglycine 10V, Negative-QTOFsplash10-03di-0003900000-120337a4ac14d3d74e3e2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Tricosanoylglycine 20V, Negative-QTOFsplash10-044i-7209600000-c8beb82efbc8e71127cc2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Tricosanoylglycine 40V, Negative-QTOFsplash10-0abc-9001000000-c5f6d2b7a4ce9a2df4962017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Tricosanoylglycine 10V, Negative-QTOFsplash10-03di-2001900000-e8df486c7c4a952f7adf2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Tricosanoylglycine 20V, Negative-QTOFsplash10-00di-9001100000-a3c0645084e1f99b85ea2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Tricosanoylglycine 40V, Negative-QTOFsplash10-00di-9000000000-006ebcc0e5a29ed26e1c2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Tricosanoylglycine 10V, Positive-QTOFsplash10-03fr-8002900000-661d71c1f5529ab52a202021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Tricosanoylglycine 20V, Positive-QTOFsplash10-004i-9012100000-d5f19f82a54a1404b82c2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Tricosanoylglycine 40V, Positive-QTOFsplash10-0a6r-9000000000-8c46b66e99477dfa9b1f2021-09-22Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane (predicted from logP)
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB029377
KNApSAcK IDNot Available
Chemspider ID21513294
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound45357456
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available