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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-12 01:19:09 UTC
Update Date2023-02-21 17:27:07 UTC
HMDB IDHMDB0039779
Secondary Accession Numbers
  • HMDB39779
Metabolite Identification
Common Namexi-3-Methyl-3-buten-2-ol
Descriptionxi-3-Methyl-3-buten-2-ol belongs to the class of organic compounds known as secondary alcohols. Secondary alcohols are compounds containing a secondary alcohol functional group, with the general structure HOC(R)(R') (R,R'=alkyl, aryl). xi-3-Methyl-3-buten-2-ol has been detected, but not quantified in, several different foods, such as breakfast cereal, cereals and cereal products, citrus, and fruits. This could make XI-3-methyl-3-buten-2-ol a potential biomarker for the consumption of these foods. Based on a literature review very few articles have been published on xi-3-Methyl-3-buten-2-ol.
Structure
Data?1677000427
SynonymsNot Available
Chemical FormulaC5H10O
Average Molecular Weight86.1323
Monoisotopic Molecular Weight86.073164942
IUPAC Name3-methylbut-3-en-2-ol
Traditional Name3-buten-2-ol, 3-methyl-
CAS Registry NumberNot Available
SMILES
CC(O)C(C)=C
InChI Identifier
InChI=1S/C5H10O/c1-4(2)5(3)6/h5-6H,1H2,2-3H3
InChI KeyJEYLKNVLTAPJAF-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as secondary alcohols. Secondary alcohols are compounds containing a secondary alcohol functional group, with the general structure HOC(R)(R') (R,R'=alkyl, aryl).
KingdomOrganic compounds
Super ClassOrganic oxygen compounds
ClassOrganooxygen compounds
Sub ClassAlcohols and polyols
Direct ParentSecondary alcohols
Alternative Parents
Substituents
  • Secondary alcohol
  • Hydrocarbon derivative
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility117 g/LALOGPS
logP0.96ALOGPS
logP0.87ChemAxon
logS0.13ALOGPS
pKa (Strongest Acidic)17.45ChemAxon
pKa (Strongest Basic)-1.7ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count1ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area20.23 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity26.12 m³·mol⁻¹ChemAxon
Polarizability10.16 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+117.25731661259
DarkChem[M-H]-110.87531661259
DeepCCS[M+H]+122.66130932474
DeepCCS[M-H]-120.60530932474
DeepCCS[M-2H]-156.46230932474
DeepCCS[M+Na]+130.91430932474
AllCCS[M+H]+124.532859911
AllCCS[M+H-H2O]+120.132859911
AllCCS[M+NH4]+128.632859911
AllCCS[M+Na]+129.832859911
AllCCS[M-H]-127.132859911
AllCCS[M+Na-2H]-131.832859911
AllCCS[M+HCOO]-137.032859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.1.81 minutes32390414
Predicted by Siyang on May 30, 202210.3408 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20223.72 minutes32390414
AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid59.2 seconds40023050
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid1316.7 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid384.1 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid115.2 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid225.4 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid63.7 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid317.5 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid441.2 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)116.7 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid745.7 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid313.0 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid950.0 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid249.6 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid283.2 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate425.4 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA335.6 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water62.0 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
xi-3-Methyl-3-buten-2-olCC(O)C(C)=C1057.7Standard polar33892256
xi-3-Methyl-3-buten-2-olCC(O)C(C)=C663.0Standard non polar33892256
xi-3-Methyl-3-buten-2-olCC(O)C(C)=C659.8Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
xi-3-Methyl-3-buten-2-ol,1TMS,isomer #1C=C(C)C(C)O[Si](C)(C)C814.3Semi standard non polar33892256
xi-3-Methyl-3-buten-2-ol,1TBDMS,isomer #1C=C(C)C(C)O[Si](C)(C)C(C)(C)C1023.6Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - xi-3-Methyl-3-buten-2-ol GC-MS (Non-derivatized) - 70eV, Positivesplash10-0006-9000000000-a37d86d9ce4dae6f2cf02017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - xi-3-Methyl-3-buten-2-ol GC-MS (1 TMS) - 70eV, Positivesplash10-0096-9300000000-8d7064fc0f22523081052017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - xi-3-Methyl-3-buten-2-ol GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - xi-3-Methyl-3-buten-2-ol GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - xi-3-Methyl-3-buten-2-ol 10V, Positive-QTOFsplash10-014r-9000000000-f3dbd084e0ae70c9a3bd2016-08-02Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - xi-3-Methyl-3-buten-2-ol 20V, Positive-QTOFsplash10-014r-9000000000-970663e0b18aad06b06e2016-08-02Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - xi-3-Methyl-3-buten-2-ol 40V, Positive-QTOFsplash10-0gbc-9000000000-c800bac151c2673a88702016-08-02Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - xi-3-Methyl-3-buten-2-ol 10V, Negative-QTOFsplash10-000i-9000000000-fdae2c85486d48463a0c2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - xi-3-Methyl-3-buten-2-ol 20V, Negative-QTOFsplash10-000i-9000000000-b35546bc3dbb9304601f2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - xi-3-Methyl-3-buten-2-ol 40V, Negative-QTOFsplash10-014i-9000000000-764539f4a9e205ed6e912016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - xi-3-Methyl-3-buten-2-ol 10V, Negative-QTOFsplash10-000i-9000000000-2091e44a102d8284a8132021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - xi-3-Methyl-3-buten-2-ol 20V, Negative-QTOFsplash10-000i-9000000000-bafbb95f64af9acf8ad52021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - xi-3-Methyl-3-buten-2-ol 40V, Negative-QTOFsplash10-00ku-9000000000-1c271fcf94b7a65537942021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - xi-3-Methyl-3-buten-2-ol 10V, Positive-QTOFsplash10-014i-9000000000-8ba63441b0323db747ec2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - xi-3-Methyl-3-buten-2-ol 20V, Positive-QTOFsplash10-014l-9000000000-4457f76d25f89672810a2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - xi-3-Methyl-3-buten-2-ol 40V, Positive-QTOFsplash10-0006-9000000000-7799f9afa159c933b3a82021-09-24Wishart LabView Spectrum

IR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M-H]-)2023-02-04FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+)2023-02-04FELIX labView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB019429
KNApSAcK IDNot Available
Chemspider ID59707
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound66329
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .