| Record Information |
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| Version | 5.0 |
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| Status | Expected but not Quantified |
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| Creation Date | 2017-09-09 03:42:55 UTC |
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| Update Date | 2022-11-30 19:26:04 UTC |
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| HMDB ID | HMDB0115139 |
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| Secondary Accession Numbers | None |
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| Metabolite Identification |
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| Common Name | PA(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)) |
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| Description | PA(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)) is a phosphatidic acid. It is a glycerophospholipid in which a phosphate moiety occupies a glycerol substitution site. As is the case with diacylglycerols, phosphatidic acids can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. Fatty acids containing 16, 18 and 20 carbons are the most common. PA(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)), in particular, consists of one chain of mead acid at the C-1 position and one chain of adrenic acid at the C-2 position. Phosphatidic acids are quite rare but are extremely important as intermediates in the biosynthesis of triacylglycerols and phospholipids. |
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| Structure | [H][C@@](COC(=O)CCC\C=C/C\C=C/C\C=C/CCCCCCCC)(COP(O)(O)=O)OC(=O)CCCCC\C=C/C\C=C/C\C=C/C\C=C/CCCCC InChI=1S/C45H75O8P/c1-3-5-7-9-11-13-15-17-19-21-22-24-26-28-30-32-34-36-38-40-45(47)53-43(42-52-54(48,49)50)41-51-44(46)39-37-35-33-31-29-27-25-23-20-18-16-14-12-10-8-6-4-2/h11,13,17-20,22,24-25,27-28,30-31,33,43H,3-10,12,14-16,21,23,26,29,32,34-42H2,1-2H3,(H2,48,49,50)/b13-11-,19-17-,20-18-,24-22-,27-25-,30-28-,33-31-/t43-/m1/s1 |
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| Synonyms | | Value | Source |
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| 1-Meadoyl-2-adrenoyl-sn-glycero-3-phosphate | HMDB | | 1-Meadoyl-2-adrenoyl-sn-phosphatidic acid | HMDB | | PA(20:3/22:4) | HMDB | | PA(20:3N9/22:4N6) | HMDB | | PA(20:3W9/22:4W6) | HMDB | | PA(42:7) | HMDB | | Phosphatidic acid(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)) | HMDB | | Phosphatidic acid(20:3/22:4) | HMDB | | Phosphatidic acid(20:3n9/22:4n6) | HMDB | | Phosphatidic acid(20:3W9/22:4W6) | HMDB | | Phosphatidic acid(42:7) | HMDB | | Phosphatidate(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)) | HMDB | | Phosphatidate(20:3/22:4) | HMDB | | Phosphatidate(20:3N9/22:4N6) | HMDB | | Phosphatidate(20:3W9/22:4W6) | HMDB | | Phosphatidate(42:7) | HMDB | | [(2R)-2-[(10Z,13Z,16Z)-Docosa-7,10,13,16-tetraenoyloxy]-3-[(5Z,8Z,11Z)-icosa-5,8,11-trienoyloxy]propoxy]phosphonate | HMDB | | 1-meadoyl-2-adrenoyl-sn-glycero-3-phosphate | SMPDB, HMDB | | 1-meadoyl-2-adrenoyl-sn-phosphatidic acid | SMPDB, HMDB | | PA(20:3/22:4) | SMPDB, HMDB | | PA(20:3n9/22:4n6) | SMPDB, HMDB | | PA(20:3w9/22:4w6) | SMPDB, HMDB | | PA(42:7) | SMPDB, HMDB | | Phosphatidic acid(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)) | SMPDB, HMDB | | Phosphatidic acid(20:3/22:4) | SMPDB, HMDB | | Phosphatidic acid(20:3n9/22:4n6) | SMPDB, HMDB | | Phosphatidic acid(20:3w9/22:4w6) | SMPDB, HMDB | | Phosphatidic acid(42:7) | SMPDB, HMDB | | Phosphatidate(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)) | SMPDB, HMDB | | Phosphatidate(20:3/22:4) | SMPDB, HMDB | | Phosphatidate(20:3n9/22:4n6) | SMPDB, HMDB | | Phosphatidate(20:3w9/22:4w6) | SMPDB, HMDB | | PA(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)) | SMPDB |
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| Chemical Formula | C45H75O8P |
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| Average Molecular Weight | 775.061 |
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| Monoisotopic Molecular Weight | 774.519956373 |
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| IUPAC Name | [(2R)-2-[(7Z,10Z,13Z,16Z)-docosa-7,10,13,16-tetraenoyloxy]-3-[(5Z,8Z,11Z)-icosa-5,8,11-trienoyloxy]propoxy]phosphonic acid |
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| Traditional Name | (2R)-2-[(7Z,10Z,13Z,16Z)-docosa-7,10,13,16-tetraenoyloxy]-3-[(5Z,8Z,11Z)-icosa-5,8,11-trienoyloxy]propoxyphosphonic acid |
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| CAS Registry Number | Not Available |
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| SMILES | [H][C@@](COC(=O)CCC\C=C/C\C=C/C\C=C/CCCCCCCC)(COP(O)(O)=O)OC(=O)CCCCC\C=C/C\C=C/C\C=C/C\C=C/CCCCC |
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| InChI Identifier | InChI=1S/C45H75O8P/c1-3-5-7-9-11-13-15-17-19-21-22-24-26-28-30-32-34-36-38-40-45(47)53-43(42-52-54(48,49)50)41-51-44(46)39-37-35-33-31-29-27-25-23-20-18-16-14-12-10-8-6-4-2/h11,13,17-20,22,24-25,27-28,30-31,33,43H,3-10,12,14-16,21,23,26,29,32,34-42H2,1-2H3,(H2,48,49,50)/b13-11-,19-17-,20-18-,24-22-,27-25-,30-28-,33-31-/t43-/m1/s1 |
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| InChI Key | IWXIDNBNHGMSMF-AKBREHGISA-N |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as 1,2-diacylglycerol-3-phosphates. These are glycerol-3-phosphates in which the glycerol moiety is bonded to two aliphatic chains through ester linkages. |
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| Kingdom | Organic compounds |
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| Super Class | Lipids and lipid-like molecules |
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| Class | Glycerophospholipids |
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| Sub Class | Glycerophosphates |
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| Direct Parent | 1,2-diacylglycerol-3-phosphates |
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| Alternative Parents | |
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| Substituents | - 1,2-diacylglycerol-3-phosphate
- Fatty acid ester
- Monoalkyl phosphate
- Dicarboxylic acid or derivatives
- Fatty acyl
- Alkyl phosphate
- Phosphoric acid ester
- Organic phosphoric acid derivative
- Carboxylic acid ester
- Carboxylic acid derivative
- Hydrocarbon derivative
- Organic oxide
- Organic oxygen compound
- Carbonyl group
- Organooxygen compound
- Aliphatic acyclic compound
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| Molecular Framework | Aliphatic acyclic compounds |
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| External Descriptors | Not Available |
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| Ontology |
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| Physiological effect | Not Available |
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| Disposition | |
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| Process | Naturally occurring processBiological processBiochemical pathwayMetabolic pathway- De Novo Triacylglycerol Biosynthesis TG(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z)) (PathBank: SMP0067931)
- De Novo Triacylglycerol Biosynthesis TG(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)/24:1(15Z)) (PathBank: SMP0076680)
- De Novo Triacylglycerol Biosynthesis TG(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)/22:4(7Z,10Z,13Z,16Z)) (PathBank: SMP0091949)
- De Novo Triacylglycerol Biosynthesis TG(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)/22:5(7Z,10Z,13Z,16Z,19Z)) (PathBank: SMP0067930)
- De Novo Triacylglycerol Biosynthesis TG(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)/24:0) (PathBank: SMP0076679)
- De Novo Triacylglycerol Biosynthesis TG(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)/22:5(4Z,7Z,10Z,13Z,16Z)) (PathBank: SMP0091950)
- De Novo Triacylglycerol Biosynthesis TG(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)/20:3(5Z,8Z,11Z)) (PathBank: SMP0023279)
- De Novo Triacylglycerol Biosynthesis TG(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)/22:1(13Z)) (PathBank: SMP0023280)
- De Novo Triacylglycerol Biosynthesis TG(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)/18:2(9Z,12Z)) (PathBank: SMP0023282)
- De Novo Triacylglycerol Biosynthesis TG(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)/18:3(6Z,9Z,12Z)) (PathBank: SMP0023283)
- De Novo Triacylglycerol Biosynthesis TG(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z)) (PathBank: SMP0023284)
- De Novo Triacylglycerol Biosynthesis TG(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)/22:2(13Z,16Z)) (PathBank: SMP0023285)
- De Novo Triacylglycerol Biosynthesis TG(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)/18:3(9Z,12Z,15Z)) (PathBank: SMP0023288)
- De Novo Triacylglycerol Biosynthesis TG(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)/18:4(6Z,9Z,12Z,15Z)) (PathBank: SMP0023289)
- De Novo Triacylglycerol Biosynthesis TG(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)/20:4(8Z,11Z,14Z,17Z)) (PathBank: SMP0023290)
- De Novo Triacylglycerol Biosynthesis TG(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)) (PathBank: SMP0023291)
- De Novo Triacylglycerol Biosynthesis TG(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)/20:2(11Z,14Z)) (PathBank: SMP0034932)
- De Novo Triacylglycerol Biosynthesis TG(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)/20:3(8Z,11Z,14Z)) (PathBank: SMP0034933)
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| Role | Not Available |
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| Physical Properties |
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| State | Solid |
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| Experimental Molecular Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Experimental Chromatographic Properties | Not Available |
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| Predicted Molecular Properties | |
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| Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Retention Times Underivatized| Chromatographic Method | Retention Time | Reference |
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| Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. | 4.78 minutes | 32390414 | | Predicted by Siyang on May 30, 2022 | 40.6767 minutes | 33406817 | | Predicted by Siyang using ReTip algorithm on June 8, 2022 | 1.92 minutes | 32390414 | | Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid | 5718.6 seconds | 40023050 | | Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid | 587.3 seconds | 40023050 | | Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid | 371.1 seconds | 40023050 | | Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid | 374.3 seconds | 40023050 | | RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 1345.6 seconds | 40023050 | | Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid | 2205.3 seconds | 40023050 | | BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid | 1170.4 seconds | 40023050 | | HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate) | 224.0 seconds | 40023050 | | UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid | 4152.4 seconds | 40023050 | | BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid | 1394.1 seconds | 40023050 | | UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid | 3162.6 seconds | 40023050 | | SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 1565.1 seconds | 40023050 | | RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 826.5 seconds | 40023050 | | MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate | 437.1 seconds | 40023050 | | KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA | 957.5 seconds | 40023050 | | Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water | 11.9 seconds | 40023050 |
Predicted Kovats Retention IndicesUnderivatized| Metabolite | SMILES | Kovats RI Value | Column Type | Reference |
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| PA(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)) | [H][C@@](COC(=O)CCC\C=C/C\C=C/C\C=C/CCCCCCCC)(COP(O)(O)=O)OC(=O)CCCCC\C=C/C\C=C/C\C=C/C\C=C/CCCCC | 5655.3 | Standard polar | 33892256 | | PA(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)) | [H][C@@](COC(=O)CCC\C=C/C\C=C/C\C=C/CCCCCCCC)(COP(O)(O)=O)OC(=O)CCCCC\C=C/C\C=C/C\C=C/C\C=C/CCCCC | 4788.4 | Standard non polar | 33892256 | | PA(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)) | [H][C@@](COC(=O)CCC\C=C/C\C=C/C\C=C/CCCCCCCC)(COP(O)(O)=O)OC(=O)CCCCC\C=C/C\C=C/C\C=C/C\C=C/CCCCC | 5512.5 | Semi standard non polar | 33892256 |
Derivatized| Derivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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| PA(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)),1TMS,isomer #1 | CCCCC/C=C\C/C=C\C/C=C\C/C=C\CCCCCC(=O)O[C@H](COC(=O)CCC/C=C\C/C=C\C/C=C\CCCCCCCC)COP(=O)(O)O[Si](C)(C)C | 5554.4 | Semi standard non polar | 33892256 | | PA(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)),1TMS,isomer #1 | CCCCC/C=C\C/C=C\C/C=C\C/C=C\CCCCCC(=O)O[C@H](COC(=O)CCC/C=C\C/C=C\C/C=C\CCCCCCCC)COP(=O)(O)O[Si](C)(C)C | 4878.8 | Standard non polar | 33892256 | | PA(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)),1TMS,isomer #1 | CCCCC/C=C\C/C=C\C/C=C\C/C=C\CCCCCC(=O)O[C@H](COC(=O)CCC/C=C\C/C=C\C/C=C\CCCCCCCC)COP(=O)(O)O[Si](C)(C)C | 5474.1 | Standard polar | 33892256 | | PA(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)),1TBDMS,isomer #1 | CCCCC/C=C\C/C=C\C/C=C\C/C=C\CCCCCC(=O)O[C@H](COC(=O)CCC/C=C\C/C=C\C/C=C\CCCCCCCC)COP(=O)(O)O[Si](C)(C)C(C)(C)C | 5762.2 | Semi standard non polar | 33892256 | | PA(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)),1TBDMS,isomer #1 | CCCCC/C=C\C/C=C\C/C=C\C/C=C\CCCCCC(=O)O[C@H](COC(=O)CCC/C=C\C/C=C\C/C=C\CCCCCCCC)COP(=O)(O)O[Si](C)(C)C(C)(C)C | 4989.3 | Standard non polar | 33892256 | | PA(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)),1TBDMS,isomer #1 | CCCCC/C=C\C/C=C\C/C=C\C/C=C\CCCCCC(=O)O[C@H](COC(=O)CCC/C=C\C/C=C\C/C=C\CCCCCCCC)COP(=O)(O)O[Si](C)(C)C(C)(C)C | 5492.9 | Standard polar | 33892256 |
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| MS/MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
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| Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)) 10V, Positive-QTOF | splash10-0170-1169802600-4efd1a6d7483e2f970e2 | 2019-02-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)) 20V, Positive-QTOF | splash10-014s-2197303100-714b9576c489dd7c87b9 | 2019-02-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)) 40V, Positive-QTOF | splash10-01p2-1198012100-858b29b5fe1fc8297134 | 2019-02-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)) 10V, Negative-QTOF | splash10-0adr-4049400300-b1a13ae0523809ed0c6d | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)) 20V, Negative-QTOF | splash10-004i-9023000000-627fa7aaa82ca3da365d | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)) 40V, Negative-QTOF | splash10-004i-9000000000-9f77b9dd931435e951fe | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)) 10V, Positive-QTOF | splash10-0002-0000000900-f8005300f8feaaa9870b | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)) 20V, Positive-QTOF | splash10-0002-0000009900-10ff8b97b6dbd8e36e44 | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)) 40V, Positive-QTOF | splash10-00ke-0000922400-20771ce4d71c723e643e | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)) 10V, Negative-QTOF | splash10-00di-0000000900-f22a3c7158c1fc82f7ac | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)) 20V, Negative-QTOF | splash10-060x-0006900400-9033de343442ba96b41b | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)) 40V, Negative-QTOF | splash10-0a59-0009300000-fbd65800c52a4654cc16 | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)) 10V, Positive-QTOF | splash10-0a6r-0000000900-811bc920eafc15bd9247 | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)) 20V, Positive-QTOF | splash10-004i-0000005900-bebdf00e320f01e5c40f | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z)) 40V, Positive-QTOF | splash10-00ou-0000906200-a75742f5559bd7e85d19 | 2021-09-24 | Wishart Lab | View Spectrum |
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