| Record Information |
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| Version | 5.0 |
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| Status | Expected but not Quantified |
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| Creation Date | 2017-09-09 03:46:11 UTC |
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| Update Date | 2022-11-30 19:26:04 UTC |
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| HMDB ID | HMDB0115157 |
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| Secondary Accession Numbers | None |
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| Metabolite Identification |
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| Common Name | PA(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) |
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| Description | PA(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) is a phosphatidic acid. It is a glycerophospholipid in which a phosphate moiety occupies a glycerol substitution site. As is the case with diacylglycerols, phosphatidic acids can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. Fatty acids containing 16, 18 and 20 carbons are the most common. PA(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)), in particular, consists of one chain of arachidonic acid at the C-1 position and one chain of eicosenoic acid at the C-2 position. Phosphatidic acids are quite rare but are extremely important as intermediates in the biosynthesis of triacylglycerols and phospholipids. |
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| Structure | [H][C@@](COC(=O)CCC\C=C/C\C=C/C\C=C/C\C=C/CCCCC)(COP(O)(O)=O)OC(=O)CCCCCCCCC\C=C/CCCCCCCC InChI=1S/C43H75O8P/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-31-33-35-37-42(44)49-39-41(40-50-52(46,47)48)51-43(45)38-36-34-32-30-28-26-24-22-20-18-16-14-12-10-8-6-4-2/h11,13,17-20,23,25,29,31,41H,3-10,12,14-16,21-22,24,26-28,30,32-40H2,1-2H3,(H2,46,47,48)/b13-11-,19-17-,20-18-,25-23-,31-29-/t41-/m1/s1 |
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| Synonyms | | Value | Source |
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| 1-Arachidonoyl-2-eicosenoyl-sn-glycero-3-phosphate | HMDB | | 1-Arachidonoyl-2-eicosenoyl-sn-phosphatidic acid | HMDB | | PA(20:4/20:1) | HMDB | | PA(20:4N6/20:1N9) | HMDB | | PA(20:4W6/20:1W9) | HMDB | | PA(40:5) | HMDB | | Phosphatidic acid(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) | HMDB | | Phosphatidic acid(20:4/20:1) | HMDB | | Phosphatidic acid(20:4n6/20:1n9) | HMDB | | Phosphatidic acid(20:4W6/20:1W9) | HMDB | | Phosphatidic acid(40:5) | HMDB | | Phosphatidate(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) | HMDB | | Phosphatidate(20:4/20:1) | HMDB | | Phosphatidate(20:4N6/20:1N9) | HMDB | | Phosphatidate(20:4W6/20:1W9) | HMDB | | Phosphatidate(40:5) | HMDB | | 1-arachidonoyl-2-eicosenoyl-sn-glycero-3-phosphate | SMPDB, HMDB | | 1-arachidonoyl-2-eicosenoyl-sn-phosphatidic acid | SMPDB, HMDB | | PA(20:4/20:1) | SMPDB, HMDB | | PA(20:4n6/20:1n9) | SMPDB, HMDB | | PA(20:4w6/20:1w9) | SMPDB, HMDB | | PA(40:5) | SMPDB, HMDB | | Phosphatidic acid(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) | SMPDB, HMDB | | Phosphatidic acid(20:4/20:1) | SMPDB, HMDB | | Phosphatidic acid(20:4n6/20:1n9) | SMPDB, HMDB | | Phosphatidic acid(20:4w6/20:1w9) | SMPDB, HMDB | | Phosphatidic acid(40:5) | SMPDB, HMDB | | Phosphatidate(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) | SMPDB, HMDB | | Phosphatidate(20:4/20:1) | SMPDB, HMDB | | Phosphatidate(20:4n6/20:1n9) | SMPDB, HMDB | | Phosphatidate(20:4w6/20:1w9) | SMPDB, HMDB | | PA(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) | SMPDB |
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| Chemical Formula | C43H75O8P |
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| Average Molecular Weight | 751.039 |
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| Monoisotopic Molecular Weight | 750.519956373 |
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| IUPAC Name | [(2R)-2-[(11Z)-icos-11-enoyloxy]-3-[(5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoyloxy]propoxy]phosphonic acid |
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| Traditional Name | (2R)-2-[(11Z)-icos-11-enoyloxy]-3-[(5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoyloxy]propoxyphosphonic acid |
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| CAS Registry Number | Not Available |
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| SMILES | [H][C@@](COC(=O)CCC\C=C/C\C=C/C\C=C/C\C=C/CCCCC)(COP(O)(O)=O)OC(=O)CCCCCCCCC\C=C/CCCCCCCC |
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| InChI Identifier | InChI=1S/C43H75O8P/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-31-33-35-37-42(44)49-39-41(40-50-52(46,47)48)51-43(45)38-36-34-32-30-28-26-24-22-20-18-16-14-12-10-8-6-4-2/h11,13,17-20,23,25,29,31,41H,3-10,12,14-16,21-22,24,26-28,30,32-40H2,1-2H3,(H2,46,47,48)/b13-11-,19-17-,20-18-,25-23-,31-29-/t41-/m1/s1 |
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| InChI Key | PKEIEZADWNOVAN-MNTTZMHZSA-N |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as 1,2-diacylglycerol-3-phosphates. These are glycerol-3-phosphates in which the glycerol moiety is bonded to two aliphatic chains through ester linkages. |
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| Kingdom | Organic compounds |
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| Super Class | Lipids and lipid-like molecules |
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| Class | Glycerophospholipids |
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| Sub Class | Glycerophosphates |
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| Direct Parent | 1,2-diacylglycerol-3-phosphates |
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| Alternative Parents | |
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| Substituents | - 1,2-diacylglycerol-3-phosphate
- Fatty acid ester
- Monoalkyl phosphate
- Dicarboxylic acid or derivatives
- Fatty acyl
- Alkyl phosphate
- Phosphoric acid ester
- Organic phosphoric acid derivative
- Carboxylic acid ester
- Carboxylic acid derivative
- Hydrocarbon derivative
- Organic oxide
- Organic oxygen compound
- Carbonyl group
- Organooxygen compound
- Aliphatic acyclic compound
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| Molecular Framework | Aliphatic acyclic compounds |
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| External Descriptors | |
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| Ontology |
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| Physiological effect | Not Available |
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| Disposition | |
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| Process | Naturally occurring processBiological processBiochemical pathwayMetabolic pathway- Cardiolipin Biosynthesis CL(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)/18:2(9Z,12Z)/18:2(9Z,12Z)) (PathBank: SMP0079892)
- De Novo Triacylglycerol Biosynthesis TG(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)/20:4(5Z,8Z,11Z,14Z)) (PathBank: SMP0024822)
- De Novo Triacylglycerol Biosynthesis TG(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)/22:2(13Z,16Z)) (PathBank: SMP0024823)
- De Novo Triacylglycerol Biosynthesis TG(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)/22:4(7Z,10Z,13Z,16Z)) (PathBank: SMP0024824)
- De Novo Triacylglycerol Biosynthesis TG(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)/22:5(4Z,7Z,10Z,13Z,16Z)) (PathBank: SMP0024825)
- De Novo Triacylglycerol Biosynthesis TG(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)/18:3(9Z,12Z,15Z)) (PathBank: SMP0024826)
- De Novo Triacylglycerol Biosynthesis TG(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)/18:4(6Z,9Z,12Z,15Z)) (PathBank: SMP0024827)
- De Novo Triacylglycerol Biosynthesis TG(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)/20:4(8Z,11Z,14Z,17Z)) (PathBank: SMP0024828)
- De Novo Triacylglycerol Biosynthesis TG(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)/20:5(5Z,8Z,11Z,14Z,17Z)) (PathBank: SMP0024829)
- De Novo Triacylglycerol Biosynthesis TG(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)/22:5(7Z,10Z,13Z,16Z,19Z)) (PathBank: SMP0024830)
- De Novo Triacylglycerol Biosynthesis TG(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z)) (PathBank: SMP0024831)
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| Role | Not Available |
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| Physical Properties |
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| State | Solid |
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| Experimental Molecular Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Experimental Chromatographic Properties | Not Available |
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| Predicted Molecular Properties | |
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| Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Retention Times Underivatized| Chromatographic Method | Retention Time | Reference |
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| Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. | 6.43 minutes | 32390414 | | Predicted by Siyang on May 30, 2022 | 38.4877 minutes | 33406817 | | Predicted by Siyang using ReTip algorithm on June 8, 2022 | 1.92 minutes | 32390414 | | Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid | 5495.8 seconds | 40023050 | | Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid | 571.1 seconds | 40023050 | | Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid | 365.4 seconds | 40023050 | | Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid | 318.1 seconds | 40023050 | | RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 1239.1 seconds | 40023050 | | Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid | 2034.7 seconds | 40023050 | | BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid | 1237.1 seconds | 40023050 | | HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate) | 237.2 seconds | 40023050 | | UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid | 3926.6 seconds | 40023050 | | BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid | 1276.1 seconds | 40023050 | | UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid | 3023.0 seconds | 40023050 | | SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 1478.0 seconds | 40023050 | | RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 786.5 seconds | 40023050 | | MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate | 507.5 seconds | 40023050 | | KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA | 911.6 seconds | 40023050 | | Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water | 11.3 seconds | 40023050 |
Predicted Kovats Retention IndicesUnderivatizedDerivatized| Derivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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| PA(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)),1TMS,isomer #1 | CCCCC/C=C\C/C=C\C/C=C\C/C=C\CCCC(=O)OC[C@H](COP(=O)(O)O[Si](C)(C)C)OC(=O)CCCCCCCCC/C=C\CCCCCCCC | 5332.2 | Semi standard non polar | 33892256 | | PA(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)),1TMS,isomer #1 | CCCCC/C=C\C/C=C\C/C=C\C/C=C\CCCC(=O)OC[C@H](COP(=O)(O)O[Si](C)(C)C)OC(=O)CCCCCCCCC/C=C\CCCCCCCC | 4692.8 | Standard non polar | 33892256 | | PA(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)),1TMS,isomer #1 | CCCCC/C=C\C/C=C\C/C=C\C/C=C\CCCC(=O)OC[C@H](COP(=O)(O)O[Si](C)(C)C)OC(=O)CCCCCCCCC/C=C\CCCCCCCC | 5678.7 | Standard polar | 33892256 | | PA(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)),2TMS,isomer #1 | CCCCC/C=C\C/C=C\C/C=C\C/C=C\CCCC(=O)OC[C@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CCCCCCCCC/C=C\CCCCCCCC | 5314.5 | Semi standard non polar | 33892256 | | PA(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)),2TMS,isomer #1 | CCCCC/C=C\C/C=C\C/C=C\C/C=C\CCCC(=O)OC[C@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CCCCCCCCC/C=C\CCCCCCCC | 4656.0 | Standard non polar | 33892256 | | PA(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)),2TMS,isomer #1 | CCCCC/C=C\C/C=C\C/C=C\C/C=C\CCCC(=O)OC[C@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CCCCCCCCC/C=C\CCCCCCCC | 4971.7 | Standard polar | 33892256 | | PA(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)),1TBDMS,isomer #1 | CCCCC/C=C\C/C=C\C/C=C\C/C=C\CCCC(=O)OC[C@H](COP(=O)(O)O[Si](C)(C)C(C)(C)C)OC(=O)CCCCCCCCC/C=C\CCCCCCCC | 5556.7 | Semi standard non polar | 33892256 | | PA(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)),1TBDMS,isomer #1 | CCCCC/C=C\C/C=C\C/C=C\C/C=C\CCCC(=O)OC[C@H](COP(=O)(O)O[Si](C)(C)C(C)(C)C)OC(=O)CCCCCCCCC/C=C\CCCCCCCC | 4794.8 | Standard non polar | 33892256 | | PA(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)),1TBDMS,isomer #1 | CCCCC/C=C\C/C=C\C/C=C\C/C=C\CCCC(=O)OC[C@H](COP(=O)(O)O[Si](C)(C)C(C)(C)C)OC(=O)CCCCCCCCC/C=C\CCCCCCCC | 5670.3 | Standard polar | 33892256 |
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| MS/MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
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| Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) 10V, Positive-QTOF | splash10-0udv-1164903600-5fdc5c2b86ec4f9090d1 | 2019-02-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) 20V, Positive-QTOF | splash10-0002-3294403100-4e69ed8aa0817a55e721 | 2019-02-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) 40V, Positive-QTOF | splash10-01ot-1197204000-8179b7bc66621d9d367d | 2019-02-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) 10V, Negative-QTOF | splash10-0f9j-8089700600-1a187615d261660301e2 | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) 20V, Negative-QTOF | splash10-004i-9022000000-d9343a16146b0b2f8ff6 | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) 40V, Negative-QTOF | splash10-004i-9000000000-072d9626c44965636ae0 | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) 10V, Negative-QTOF | splash10-0002-0000000900-dccfdbdd55d97899a05d | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) 20V, Negative-QTOF | splash10-0k9b-0006900400-ca790b04829100e50f53 | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) 40V, Negative-QTOF | splash10-0zfr-0009300000-614bf2c42a0f79486003 | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) 10V, Positive-QTOF | splash10-0f89-0000000900-d8f32a3c09a28b1da180 | 2021-09-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) 20V, Positive-QTOF | splash10-0udi-0000005900-68faa2d50ad332a047a1 | 2021-09-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) 40V, Positive-QTOF | splash10-0udm-0000906200-ec6c067d3a914e3b5c81 | 2021-09-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) 10V, Positive-QTOF | splash10-00di-0000000900-4e68058f639f4a1afda3 | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) 20V, Positive-QTOF | splash10-00i0-0000009900-b9a0e5abde079e70483b | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) 40V, Positive-QTOF | splash10-02pr-0000902300-5f86268efc3670bb9736 | 2021-09-25 | Wishart Lab | View Spectrum |
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