| Record Information |
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| Version | 5.0 |
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| Status | Expected but not Quantified |
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| Creation Date | 2017-09-09 03:46:56 UTC |
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| Update Date | 2022-11-30 19:26:04 UTC |
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| HMDB ID | HMDB0115162 |
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| Secondary Accession Numbers | None |
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| Metabolite Identification |
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| Common Name | PA(20:4(5Z,8Z,11Z,14Z)/22:0) |
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| Description | PA(20:4(5Z,8Z,11Z,14Z)/22:0) is a phosphatidic acid. It is a glycerophospholipid in which a phosphate moiety occupies a glycerol substitution site. As is the case with diacylglycerols, phosphatidic acids can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. Fatty acids containing 16, 18 and 20 carbons are the most common. PA(20:4(5Z,8Z,11Z,14Z)/22:0), in particular, consists of one chain of arachidonic acid at the C-1 position and one chain of behenic acid at the C-2 position. Phosphatidic acids are quite rare but are extremely important as intermediates in the biosynthesis of triacylglycerols and phospholipids. |
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| Structure | [H][C@@](COC(=O)CCC\C=C/C\C=C/C\C=C/C\C=C/CCCCC)(COP(O)(O)=O)OC(=O)CCCCCCCCCCCCCCCCCCCCC InChI=1S/C45H81O8P/c1-3-5-7-9-11-13-15-17-19-21-22-24-26-28-30-32-34-36-38-40-45(47)53-43(42-52-54(48,49)50)41-51-44(46)39-37-35-33-31-29-27-25-23-20-18-16-14-12-10-8-6-4-2/h12,14,18,20,25,27,31,33,43H,3-11,13,15-17,19,21-24,26,28-30,32,34-42H2,1-2H3,(H2,48,49,50)/b14-12-,20-18-,27-25-,33-31-/t43-/m1/s1 |
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| Synonyms | | Value | Source |
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| 1-Arachidonoyl-2-behenoyl-sn-glycero-3-phosphate | HMDB | | 1-Arachidonoyl-2-behenoyl-sn-phosphatidic acid | HMDB | | PA(20:4/22:0) | HMDB | | PA(20:4N6/22:0) | HMDB | | PA(20:4W6/22:0) | HMDB | | PA(42:4) | HMDB | | Phosphatidic acid(20:4(5Z,8Z,11Z,14Z)/22:0) | HMDB | | Phosphatidic acid(20:4/22:0) | HMDB | | Phosphatidic acid(20:4n6/22:0) | HMDB | | Phosphatidic acid(20:4W6/22:0) | HMDB | | Phosphatidic acid(42:4) | HMDB | | Phosphatidate(20:4(5Z,8Z,11Z,14Z)/22:0) | HMDB | | Phosphatidate(20:4/22:0) | HMDB | | Phosphatidate(20:4N6/22:0) | HMDB | | Phosphatidate(20:4W6/22:0) | HMDB | | Phosphatidate(42:4) | HMDB | | 1-arachidonoyl-2-behenoyl-sn-glycero-3-phosphate | SMPDB, HMDB | | 1-arachidonoyl-2-behenoyl-sn-phosphatidic acid | SMPDB, HMDB | | PA(20:4/22:0) | SMPDB, HMDB | | PA(20:4n6/22:0) | SMPDB, HMDB | | PA(20:4w6/22:0) | SMPDB, HMDB | | PA(42:4) | SMPDB, HMDB | | Phosphatidic acid(20:4(5Z,8Z,11Z,14Z)/22:0) | SMPDB, HMDB | | Phosphatidic acid(20:4/22:0) | SMPDB, HMDB | | Phosphatidic acid(20:4n6/22:0) | SMPDB, HMDB | | Phosphatidic acid(20:4w6/22:0) | SMPDB, HMDB | | Phosphatidic acid(42:4) | SMPDB, HMDB | | Phosphatidate(20:4(5Z,8Z,11Z,14Z)/22:0) | SMPDB, HMDB | | Phosphatidate(20:4/22:0) | SMPDB, HMDB | | Phosphatidate(20:4n6/22:0) | SMPDB, HMDB | | Phosphatidate(20:4w6/22:0) | SMPDB, HMDB | | PA(20:4(5Z,8Z,11Z,14Z)/22:0) | SMPDB |
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| Chemical Formula | C45H81O8P |
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| Average Molecular Weight | 781.109 |
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| Monoisotopic Molecular Weight | 780.566906566 |
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| IUPAC Name | [(2R)-2-(docosanoyloxy)-3-[(5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoyloxy]propoxy]phosphonic acid |
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| Traditional Name | (2R)-2-(docosanoyloxy)-3-[(5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoyloxy]propoxyphosphonic acid |
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| CAS Registry Number | Not Available |
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| SMILES | [H][C@@](COC(=O)CCC\C=C/C\C=C/C\C=C/C\C=C/CCCCC)(COP(O)(O)=O)OC(=O)CCCCCCCCCCCCCCCCCCCCC |
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| InChI Identifier | InChI=1S/C45H81O8P/c1-3-5-7-9-11-13-15-17-19-21-22-24-26-28-30-32-34-36-38-40-45(47)53-43(42-52-54(48,49)50)41-51-44(46)39-37-35-33-31-29-27-25-23-20-18-16-14-12-10-8-6-4-2/h12,14,18,20,25,27,31,33,43H,3-11,13,15-17,19,21-24,26,28-30,32,34-42H2,1-2H3,(H2,48,49,50)/b14-12-,20-18-,27-25-,33-31-/t43-/m1/s1 |
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| InChI Key | HBVMTCTVYSYQHG-FKKIPMTRSA-N |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as 1,2-diacylglycerol-3-phosphates. These are glycerol-3-phosphates in which the glycerol moiety is bonded to two aliphatic chains through ester linkages. |
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| Kingdom | Organic compounds |
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| Super Class | Lipids and lipid-like molecules |
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| Class | Glycerophospholipids |
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| Sub Class | Glycerophosphates |
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| Direct Parent | 1,2-diacylglycerol-3-phosphates |
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| Alternative Parents | |
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| Substituents | - 1,2-diacylglycerol-3-phosphate
- Fatty acid ester
- Monoalkyl phosphate
- Dicarboxylic acid or derivatives
- Fatty acyl
- Alkyl phosphate
- Phosphoric acid ester
- Organic phosphoric acid derivative
- Carboxylic acid ester
- Carboxylic acid derivative
- Hydrocarbon derivative
- Organic oxide
- Organic oxygen compound
- Carbonyl group
- Organooxygen compound
- Aliphatic acyclic compound
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| Molecular Framework | Aliphatic acyclic compounds |
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| External Descriptors | |
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| Ontology |
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| Physiological effect | Not Available |
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| Disposition | |
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| Process | Naturally occurring processBiological processBiochemical pathwayMetabolic pathway- De Novo Triacylglycerol Biosynthesis TG(20:4(5Z,8Z,11Z,14Z)/22:0/22:5(7Z,10Z,13Z,16Z,19Z)) (PathBank: SMP0076825)
- De Novo Triacylglycerol Biosynthesis TG(20:4(5Z,8Z,11Z,14Z)/22:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z)) (PathBank: SMP0076826)
- De Novo Triacylglycerol Biosynthesis TG(20:4(5Z,8Z,11Z,14Z)/22:0/24:0) (PathBank: SMP0076827)
- De Novo Triacylglycerol Biosynthesis TG(20:4(5Z,8Z,11Z,14Z)/22:0/22:1(13Z)) (PathBank: SMP0092095)
- De Novo Triacylglycerol Biosynthesis TG(20:4(5Z,8Z,11Z,14Z)/22:0/24:1(15Z)) (PathBank: SMP0092102)
- De Novo Triacylglycerol Biosynthesis TG(20:4(5Z,8Z,11Z,14Z)/22:0/22:0) (PathBank: SMP0096160)
- De Novo Triacylglycerol Biosynthesis TG(20:4(5Z,8Z,11Z,14Z)/22:0/22:2(13Z,16Z)) (PathBank: SMP0068075)
- De Novo Triacylglycerol Biosynthesis TG(20:4(5Z,8Z,11Z,14Z)/22:0/22:5(4Z,7Z,10Z,13Z,16Z)) (PathBank: SMP0068077)
- De Novo Triacylglycerol Biosynthesis TG(20:4(5Z,8Z,11Z,14Z)/22:0/22:4(7Z,10Z,13Z,16Z)) (PathBank: SMP0092097)
- De Novo Triacylglycerol Biosynthesis TG(20:4(5Z,8Z,11Z,14Z)/22:0/20:4(5Z,8Z,11Z,14Z)) (PathBank: SMP0024766)
- De Novo Triacylglycerol Biosynthesis TG(20:4(5Z,8Z,11Z,14Z)/22:0/18:3(9Z,12Z,15Z)) (PathBank: SMP0024770)
- De Novo Triacylglycerol Biosynthesis TG(20:4(5Z,8Z,11Z,14Z)/22:0/18:4(6Z,9Z,12Z,15Z)) (PathBank: SMP0024771)
- De Novo Triacylglycerol Biosynthesis TG(20:4(5Z,8Z,11Z,14Z)/22:0/20:4(8Z,11Z,14Z,17Z)) (PathBank: SMP0024772)
- De Novo Triacylglycerol Biosynthesis TG(20:4(5Z,8Z,11Z,14Z)/22:0/20:5(5Z,8Z,11Z,14Z,17Z)) (PathBank: SMP0024773)
- Cardiolipin Biosynthesis CL(20:4(5Z,8Z,11Z,14Z)/22:0/22:0/22:0) (PathBank: SMP0100027)
- Cardiolipin Biosynthesis CL(20:4(5Z,8Z,11Z,14Z)/22:0/22:0/22:1(13Z)) (PathBank: SMP0100028)
- Cardiolipin Biosynthesis CL(20:4(5Z,8Z,11Z,14Z)/22:0/22:1(13Z)/22:1(13Z)) (PathBank: SMP0100029)
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| Role | Not Available |
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| Physical Properties |
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| State | Solid |
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| Experimental Molecular Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Experimental Chromatographic Properties | Not Available |
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| Predicted Molecular Properties | |
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| Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Retention Times Underivatized| Chromatographic Method | Retention Time | Reference |
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| Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. | 6.93 minutes | 32390414 | | Predicted by Siyang on May 30, 2022 | 41.3638 minutes | 33406817 | | Predicted by Siyang using ReTip algorithm on June 8, 2022 | 2.0 minutes | 32390414 | | Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid | 5728.5 seconds | 40023050 | | Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid | 681.0 seconds | 40023050 | | Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid | 399.6 seconds | 40023050 | | Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid | 337.8 seconds | 40023050 | | RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 1261.5 seconds | 40023050 | | Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid | 2123.0 seconds | 40023050 | | BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid | 1423.3 seconds | 40023050 | | HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate) | 230.1 seconds | 40023050 | | UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid | 4168.0 seconds | 40023050 | | BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid | 1294.2 seconds | 40023050 | | UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid | 3231.0 seconds | 40023050 | | SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 1593.9 seconds | 40023050 | | RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 828.2 seconds | 40023050 | | MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate | 654.7 seconds | 40023050 | | KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA | 946.8 seconds | 40023050 | | Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water | 11.3 seconds | 40023050 |
Predicted Kovats Retention IndicesUnderivatizedDerivatized| Derivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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| PA(20:4(5Z,8Z,11Z,14Z)/22:0),1TMS,isomer #1 | CCCCC/C=C\C/C=C\C/C=C\C/C=C\CCCC(=O)OC[C@H](COP(=O)(O)O[Si](C)(C)C)OC(=O)CCCCCCCCCCCCCCCCCCCCC | 5555.6 | Semi standard non polar | 33892256 | | PA(20:4(5Z,8Z,11Z,14Z)/22:0),1TMS,isomer #1 | CCCCC/C=C\C/C=C\C/C=C\C/C=C\CCCC(=O)OC[C@H](COP(=O)(O)O[Si](C)(C)C)OC(=O)CCCCCCCCCCCCCCCCCCCCC | 4880.0 | Standard non polar | 33892256 | | PA(20:4(5Z,8Z,11Z,14Z)/22:0),1TMS,isomer #1 | CCCCC/C=C\C/C=C\C/C=C\C/C=C\CCCC(=O)OC[C@H](COP(=O)(O)O[Si](C)(C)C)OC(=O)CCCCCCCCCCCCCCCCCCCCC | 6126.4 | Standard polar | 33892256 | | PA(20:4(5Z,8Z,11Z,14Z)/22:0),1TBDMS,isomer #1 | CCCCC/C=C\C/C=C\C/C=C\C/C=C\CCCC(=O)OC[C@H](COP(=O)(O)O[Si](C)(C)C(C)(C)C)OC(=O)CCCCCCCCCCCCCCCCCCCCC | 5772.1 | Semi standard non polar | 33892256 | | PA(20:4(5Z,8Z,11Z,14Z)/22:0),1TBDMS,isomer #1 | CCCCC/C=C\C/C=C\C/C=C\C/C=C\CCCC(=O)OC[C@H](COP(=O)(O)O[Si](C)(C)C(C)(C)C)OC(=O)CCCCCCCCCCCCCCCCCCCCC | 4968.4 | Standard non polar | 33892256 | | PA(20:4(5Z,8Z,11Z,14Z)/22:0),1TBDMS,isomer #1 | CCCCC/C=C\C/C=C\C/C=C\C/C=C\CCCC(=O)OC[C@H](COP(=O)(O)O[Si](C)(C)C(C)(C)C)OC(=O)CCCCCCCCCCCCCCCCCCCCC | 6098.8 | Standard polar | 33892256 |
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| MS/MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
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| Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:4(5Z,8Z,11Z,14Z)/22:0) 10V, Positive-QTOF | splash10-008l-1159702600-2f309cb7e877103c2592 | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:4(5Z,8Z,11Z,14Z)/22:0) 20V, Positive-QTOF | splash10-0072-2289302200-7f3212723fdcc389553e | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:4(5Z,8Z,11Z,14Z)/22:0) 40V, Positive-QTOF | splash10-06yt-1198002100-fcceed447c47e620ec6b | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:4(5Z,8Z,11Z,14Z)/22:0) 10V, Negative-QTOF | splash10-0f9i-5049400300-6bb8741d9129892b0202 | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:4(5Z,8Z,11Z,14Z)/22:0) 20V, Negative-QTOF | splash10-004i-9023000000-c21f0f04dd71d4cf5c59 | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:4(5Z,8Z,11Z,14Z)/22:0) 40V, Negative-QTOF | splash10-004i-9000000000-90e7f344cff731d09bc9 | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:4(5Z,8Z,11Z,14Z)/22:0) 10V, Positive-QTOF | splash10-0udi-0000000090-faa9cdcdef13f4e1a75e | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:4(5Z,8Z,11Z,14Z)/22:0) 20V, Positive-QTOF | splash10-14i0-0000000990-d2c675cb4645a7eae1fa | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:4(5Z,8Z,11Z,14Z)/22:0) 40V, Positive-QTOF | splash10-11pj-0000920230-b89fc618715b4401d586 | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:4(5Z,8Z,11Z,14Z)/22:0) 10V, Positive-QTOF | splash10-03e9-0000000900-5758e0ff0c13618a7b94 | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:4(5Z,8Z,11Z,14Z)/22:0) 20V, Positive-QTOF | splash10-001i-0000005900-9de5ca1c3a2ad9c8465f | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:4(5Z,8Z,11Z,14Z)/22:0) 40V, Positive-QTOF | splash10-003u-0000906200-55b2309bc1125e6a24fc | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:4(5Z,8Z,11Z,14Z)/22:0) 10V, Negative-QTOF | splash10-004i-0000000900-d82318e0eebb3edd5000 | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:4(5Z,8Z,11Z,14Z)/22:0) 20V, Negative-QTOF | splash10-004r-0006900400-914734cc389e979d4c5a | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:4(5Z,8Z,11Z,14Z)/22:0) 40V, Negative-QTOF | splash10-0udr-0009300000-5e62ad9a7e96dc7e3e70 | 2021-09-22 | Wishart Lab | View Spectrum |
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