| Record Information |
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| Version | 5.0 |
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| Status | Expected but not Quantified |
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| Creation Date | 2017-09-09 04:20:02 UTC |
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| Update Date | 2022-11-30 19:26:08 UTC |
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| HMDB ID | HMDB0115313 |
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| Secondary Accession Numbers | None |
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| Metabolite Identification |
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| Common Name | PA(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)) |
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| Description | PA(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)) is a phosphatidic acid. It is a glycerophospholipid in which a phosphate moiety occupies a glycerol substitution site. As is the case with diacylglycerols, phosphatidic acids can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. Fatty acids containing 16, 18 and 20 carbons are the most common. PA(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)), in particular, consists of one chain of docosadienoic acid at the C-1 position and one chain of eicosapentaenoic acid at the C-2 position. Phosphatidic acids are quite rare but are extremely important as intermediates in the biosynthesis of triacylglycerols and phospholipids. |
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| Structure | [H][C@@](COC(=O)CCCCCCCCCCC\C=C/C\C=C/CCCCC)(COP(O)(O)=O)OC(=O)CCC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CC InChI=1S/C45H75O8P/c1-3-5-7-9-11-13-15-17-19-21-22-24-25-27-29-31-33-35-37-39-44(46)51-41-43(42-52-54(48,49)50)53-45(47)40-38-36-34-32-30-28-26-23-20-18-16-14-12-10-8-6-4-2/h6,8,11-14,17-20,26,28,32,34,43H,3-5,7,9-10,15-16,21-25,27,29-31,33,35-42H2,1-2H3,(H2,48,49,50)/b8-6-,13-11-,14-12-,19-17-,20-18-,28-26-,34-32-/t43-/m1/s1 |
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| Synonyms | | Value | Source |
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| 1-Docosadienoyl-2-eicosapentaenoyl-sn-glycero-3-phosphate | HMDB | | 1-Docosadienoyl-2-eicosapentaenoyl-sn-phosphatidic acid | HMDB | | PA(22:2/20:5) | HMDB | | PA(22:2N6/20:5N3) | HMDB | | PA(22:2W6/20:5W3) | HMDB | | PA(42:7) | HMDB | | Phosphatidic acid(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)) | HMDB | | Phosphatidic acid(22:2/20:5) | HMDB | | Phosphatidic acid(22:2n6/20:5n3) | HMDB | | Phosphatidic acid(22:2W6/20:5W3) | HMDB | | Phosphatidic acid(42:7) | HMDB | | Phosphatidate(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)) | HMDB | | Phosphatidate(22:2/20:5) | HMDB | | Phosphatidate(22:2N6/20:5N3) | HMDB | | Phosphatidate(22:2W6/20:5W3) | HMDB | | Phosphatidate(42:7) | HMDB | | 1-docosadienoyl-2-eicosapentaenoyl-sn-glycero-3-phosphate | SMPDB, HMDB | | 1-docosadienoyl-2-eicosapentaenoyl-sn-phosphatidic acid | SMPDB, HMDB | | PA(22:2/20:5) | SMPDB, HMDB | | PA(22:2n6/20:5n3) | SMPDB, HMDB | | PA(22:2w6/20:5w3) | SMPDB, HMDB | | PA(42:7) | SMPDB, HMDB | | Phosphatidic acid(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)) | SMPDB, HMDB | | Phosphatidic acid(22:2/20:5) | SMPDB, HMDB | | Phosphatidic acid(22:2n6/20:5n3) | SMPDB, HMDB | | Phosphatidic acid(22:2w6/20:5w3) | SMPDB, HMDB | | Phosphatidic acid(42:7) | SMPDB, HMDB | | Phosphatidate(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)) | SMPDB, HMDB | | Phosphatidate(22:2/20:5) | SMPDB, HMDB | | Phosphatidate(22:2n6/20:5n3) | SMPDB, HMDB | | Phosphatidate(22:2w6/20:5w3) | SMPDB, HMDB | | PA(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)) | SMPDB |
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| Chemical Formula | C45H75O8P |
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| Average Molecular Weight | 775.061 |
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| Monoisotopic Molecular Weight | 774.519956373 |
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| IUPAC Name | [(2R)-3-[(13Z,16Z)-docosa-13,16-dienoyloxy]-2-[(5Z,8Z,11Z,14Z,17Z)-icosa-5,8,11,14,17-pentaenoyloxy]propoxy]phosphonic acid |
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| Traditional Name | (2R)-3-[(13Z,16Z)-docosa-13,16-dienoyloxy]-2-[(5Z,8Z,11Z,14Z,17Z)-icosa-5,8,11,14,17-pentaenoyloxy]propoxyphosphonic acid |
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| CAS Registry Number | Not Available |
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| SMILES | [H][C@@](COC(=O)CCCCCCCCCCC\C=C/C\C=C/CCCCC)(COP(O)(O)=O)OC(=O)CCC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CC |
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| InChI Identifier | InChI=1S/C45H75O8P/c1-3-5-7-9-11-13-15-17-19-21-22-24-25-27-29-31-33-35-37-39-44(46)51-41-43(42-52-54(48,49)50)53-45(47)40-38-36-34-32-30-28-26-23-20-18-16-14-12-10-8-6-4-2/h6,8,11-14,17-20,26,28,32,34,43H,3-5,7,9-10,15-16,21-25,27,29-31,33,35-42H2,1-2H3,(H2,48,49,50)/b8-6-,13-11-,14-12-,19-17-,20-18-,28-26-,34-32-/t43-/m1/s1 |
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| InChI Key | MXWJRUQBDNIPPT-XMZKONMASA-N |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as 1,2-diacylglycerol-3-phosphates. These are glycerol-3-phosphates in which the glycerol moiety is bonded to two aliphatic chains through ester linkages. |
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| Kingdom | Organic compounds |
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| Super Class | Lipids and lipid-like molecules |
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| Class | Glycerophospholipids |
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| Sub Class | Glycerophosphates |
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| Direct Parent | 1,2-diacylglycerol-3-phosphates |
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| Alternative Parents | |
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| Substituents | - 1,2-diacylglycerol-3-phosphate
- Fatty acid ester
- Monoalkyl phosphate
- Dicarboxylic acid or derivatives
- Fatty acyl
- Alkyl phosphate
- Phosphoric acid ester
- Organic phosphoric acid derivative
- Carboxylic acid ester
- Carboxylic acid derivative
- Hydrocarbon derivative
- Organic oxide
- Organic oxygen compound
- Carbonyl group
- Organooxygen compound
- Aliphatic acyclic compound
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| Molecular Framework | Aliphatic acyclic compounds |
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| External Descriptors | |
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| Ontology |
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| Physiological effect | Not Available |
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| Disposition | |
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| Process | Naturally occurring processBiological processBiochemical pathwayMetabolic pathway- De Novo Triacylglycerol Biosynthesis TG(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)/22:2(13Z,16Z)) (PathBank: SMP0025192)
- De Novo Triacylglycerol Biosynthesis TG(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)/22:4(7Z,10Z,13Z,16Z)) (PathBank: SMP0025193)
- De Novo Triacylglycerol Biosynthesis TG(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)/22:5(4Z,7Z,10Z,13Z,16Z)) (PathBank: SMP0025194)
- De Novo Triacylglycerol Biosynthesis TG(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)/18:3(9Z,12Z,15Z)) (PathBank: SMP0025195)
- De Novo Triacylglycerol Biosynthesis TG(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)/18:4(6Z,9Z,12Z,15Z)) (PathBank: SMP0025196)
- De Novo Triacylglycerol Biosynthesis TG(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)/20:4(8Z,11Z,14Z,17Z)) (PathBank: SMP0025197)
- De Novo Triacylglycerol Biosynthesis TG(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)/20:5(5Z,8Z,11Z,14Z,17Z)) (PathBank: SMP0025198)
- De Novo Triacylglycerol Biosynthesis TG(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)/22:5(7Z,10Z,13Z,16Z,19Z)) (PathBank: SMP0025199)
- De Novo Triacylglycerol Biosynthesis TG(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z)) (PathBank: SMP0025200)
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| Role | Not Available |
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| Physical Properties |
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| State | Solid |
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| Experimental Molecular Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Experimental Chromatographic Properties | Not Available |
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| Predicted Molecular Properties | |
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| Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Retention Times Underivatized| Chromatographic Method | Retention Time | Reference |
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| Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. | 4.78 minutes | 32390414 | | Predicted by Siyang on May 30, 2022 | 40.0027 minutes | 33406817 | | Predicted by Siyang using ReTip algorithm on June 8, 2022 | 1.92 minutes | 32390414 | | Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid | 5671.0 seconds | 40023050 | | Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid | 553.5 seconds | 40023050 | | Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid | 364.4 seconds | 40023050 | | Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid | 360.5 seconds | 40023050 | | RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 1327.7 seconds | 40023050 | | Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid | 2149.0 seconds | 40023050 | | BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid | 1169.8 seconds | 40023050 | | HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate) | 209.6 seconds | 40023050 | | UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid | 4078.8 seconds | 40023050 | | BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid | 1376.0 seconds | 40023050 | | UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid | 3103.8 seconds | 40023050 | | SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 1546.0 seconds | 40023050 | | RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 816.8 seconds | 40023050 | | MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate | 403.5 seconds | 40023050 | | KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA | 914.1 seconds | 40023050 | | Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water | 11.9 seconds | 40023050 |
Predicted Kovats Retention IndicesUnderivatized| Metabolite | SMILES | Kovats RI Value | Column Type | Reference |
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| PA(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)) | [H][C@@](COC(=O)CCCCCCCCCCC\C=C/C\C=C/CCCCC)(COP(O)(O)=O)OC(=O)CCC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CC | 5677.1 | Standard polar | 33892256 | | PA(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)) | [H][C@@](COC(=O)CCCCCCCCCCC\C=C/C\C=C/CCCCC)(COP(O)(O)=O)OC(=O)CCC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CC | 4819.2 | Standard non polar | 33892256 | | PA(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)) | [H][C@@](COC(=O)CCCCCCCCCCC\C=C/C\C=C/CCCCC)(COP(O)(O)=O)OC(=O)CCC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CC | 5515.6 | Semi standard non polar | 33892256 |
Derivatized| Derivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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| PA(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)),1TMS,isomer #1 | CC/C=C\C/C=C\C/C=C\C/C=C\C/C=C\CCCC(=O)O[C@H](COC(=O)CCCCCCCCCCC/C=C\C/C=C\CCCCC)COP(=O)(O)O[Si](C)(C)C | 5561.7 | Semi standard non polar | 33892256 | | PA(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)),1TMS,isomer #1 | CC/C=C\C/C=C\C/C=C\C/C=C\C/C=C\CCCC(=O)O[C@H](COC(=O)CCCCCCCCCCC/C=C\C/C=C\CCCCC)COP(=O)(O)O[Si](C)(C)C | 4879.8 | Standard non polar | 33892256 | | PA(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)),1TMS,isomer #1 | CC/C=C\C/C=C\C/C=C\C/C=C\C/C=C\CCCC(=O)O[C@H](COC(=O)CCCCCCCCCCC/C=C\C/C=C\CCCCC)COP(=O)(O)O[Si](C)(C)C | 5507.9 | Standard polar | 33892256 | | PA(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)),1TBDMS,isomer #1 | CC/C=C\C/C=C\C/C=C\C/C=C\C/C=C\CCCC(=O)O[C@H](COC(=O)CCCCCCCCCCC/C=C\C/C=C\CCCCC)COP(=O)(O)O[Si](C)(C)C(C)(C)C | 5774.8 | Semi standard non polar | 33892256 | | PA(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)),1TBDMS,isomer #1 | CC/C=C\C/C=C\C/C=C\C/C=C\C/C=C\CCCC(=O)O[C@H](COC(=O)CCCCCCCCCCC/C=C\C/C=C\CCCCC)COP(=O)(O)O[Si](C)(C)C(C)(C)C | 4987.9 | Standard non polar | 33892256 | | PA(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)),1TBDMS,isomer #1 | CC/C=C\C/C=C\C/C=C\C/C=C\C/C=C\CCCC(=O)O[C@H](COC(=O)CCCCCCCCCCC/C=C\C/C=C\CCCCC)COP(=O)(O)O[Si](C)(C)C(C)(C)C | 5525.5 | Standard polar | 33892256 |
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| MS/MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
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| Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)) 10V, Positive-QTOF | splash10-00p0-1169803600-16e63565e21a745c0c52 | 2019-02-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)) 20V, Positive-QTOF | splash10-00ks-3298403100-b9ba23ac694e2eceac5c | 2019-02-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)) 40V, Positive-QTOF | splash10-00mo-1189002100-061c530f811475960ac1 | 2019-02-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)) 10V, Negative-QTOF | splash10-00tr-3019300200-ace9c905c76c3bfd6eeb | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)) 20V, Negative-QTOF | splash10-004i-9015000000-1d77bc472a45fd528887 | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)) 40V, Negative-QTOF | splash10-004i-9000000000-7d9cb17a83a67ab355b0 | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)) 10V, Positive-QTOF | splash10-0002-0000000900-f8005300f8feaaa9870b | 2021-09-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)) 20V, Positive-QTOF | splash10-0002-0000009900-10ff8b97b6dbd8e36e44 | 2021-09-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)) 40V, Positive-QTOF | splash10-01ot-0000922400-47639a2146b542bda601 | 2021-09-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)) 10V, Positive-QTOF | splash10-0a6r-0000000900-811bc920eafc15bd9247 | 2021-09-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)) 20V, Positive-QTOF | splash10-004i-0000005900-bebdf00e320f01e5c40f | 2021-09-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)) 40V, Positive-QTOF | splash10-00bi-0000906200-5739f5857d3aefbd4c35 | 2021-09-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)) 10V, Negative-QTOF | splash10-00di-0000000900-f22a3c7158c1fc82f7ac | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)) 20V, Negative-QTOF | splash10-00dr-0006900400-e153c02189e884123044 | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)) 40V, Negative-QTOF | splash10-0f79-0009300000-9764d4a33b40797ae02c | 2021-09-24 | Wishart Lab | View Spectrum |
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| Pathways | |
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