| Record Information |
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| Version | 5.0 |
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| Status | Expected but not Quantified |
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| Creation Date | 2017-09-09 04:32:57 UTC |
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| Update Date | 2022-11-30 19:26:10 UTC |
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| HMDB ID | HMDB0115378 |
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| Secondary Accession Numbers | None |
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| Metabolite Identification |
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| Common Name | PA(22:5(7Z,10Z,13Z,16Z,19Z)/16:0) |
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| Description | PA(22:5(7Z,10Z,13Z,16Z,19Z)/16:0) is a phosphatidic acid. It is a glycerophospholipid in which a phosphate moiety occupies a glycerol substitution site. As is the case with diacylglycerols, phosphatidic acids can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. Fatty acids containing 16, 18 and 20 carbons are the most common. PA(22:5(7Z,10Z,13Z,16Z,19Z)/16:0), in particular, consists of one chain of clupanodonic acid at the C-1 position and one chain of palmitic acid at the C-2 position. Phosphatidic acids are quite rare but are extremely important as intermediates in the biosynthesis of triacylglycerols and phospholipids. |
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| Structure | [H][C@@](COC(=O)CCCCC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CC)(COP(O)(O)=O)OC(=O)CCCCCCCCCCCCCCC InChI=1S/C41H71O8P/c1-3-5-7-9-11-13-15-17-18-19-20-21-22-24-25-27-29-31-33-35-40(42)47-37-39(38-48-50(44,45)46)49-41(43)36-34-32-30-28-26-23-16-14-12-10-8-6-4-2/h5,7,11,13,17-18,20-21,24-25,39H,3-4,6,8-10,12,14-16,19,22-23,26-38H2,1-2H3,(H2,44,45,46)/b7-5-,13-11-,18-17-,21-20-,25-24-/t39-/m1/s1 |
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| Synonyms | | Value | Source |
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| 1-Clupanodonoyl-2-palmitoyl-sn-glycero-3-phosphate | HMDB | | 1-Clupanodonoyl-2-palmitoyl-sn-phosphatidic acid | HMDB | | PA(22:5/16:0) | HMDB | | PA(22:5N3/16:0) | HMDB | | PA(22:5W3/16:0) | HMDB | | PA(38:5) | HMDB | | Phosphatidic acid(22:5(7Z,10Z,13Z,16Z,19Z)/16:0) | HMDB | | Phosphatidic acid(22:5/16:0) | HMDB | | Phosphatidic acid(22:5n3/16:0) | HMDB | | Phosphatidic acid(22:5W3/16:0) | HMDB | | Phosphatidic acid(38:5) | HMDB | | Phosphatidate(22:5(7Z,10Z,13Z,16Z,19Z)/16:0) | HMDB | | Phosphatidate(22:5/16:0) | HMDB | | Phosphatidate(22:5N3/16:0) | HMDB | | Phosphatidate(22:5W3/16:0) | HMDB | | Phosphatidate(38:5) | HMDB | | [(2R)-3-[(7Z,13Z,16Z,19Z)-Docosa-7,10,13,16,19-pentaenoyloxy]-2-(hexadecanoyloxy)propoxy]phosphonate | HMDB | | 1-clupanodonoyl-2-palmitoyl-sn-glycero-3-phosphate | SMPDB, HMDB | | 1-clupanodonoyl-2-palmitoyl-sn-phosphatidic acid | SMPDB, HMDB | | PA(22:5/16:0) | SMPDB, HMDB | | PA(22:5n3/16:0) | SMPDB, HMDB | | PA(22:5w3/16:0) | SMPDB, HMDB | | PA(38:5) | SMPDB, HMDB | | Phosphatidic acid(22:5(7Z,10Z,13Z,16Z,19Z)/16:0) | SMPDB, HMDB | | Phosphatidic acid(22:5/16:0) | SMPDB, HMDB | | Phosphatidic acid(22:5n3/16:0) | SMPDB, HMDB | | Phosphatidic acid(22:5w3/16:0) | SMPDB, HMDB | | Phosphatidic acid(38:5) | SMPDB, HMDB | | Phosphatidate(22:5(7Z,10Z,13Z,16Z,19Z)/16:0) | SMPDB, HMDB | | Phosphatidate(22:5/16:0) | SMPDB, HMDB | | Phosphatidate(22:5n3/16:0) | SMPDB, HMDB | | Phosphatidate(22:5w3/16:0) | SMPDB, HMDB | | PA(22:5(7Z,10Z,13Z,16Z,19Z)/16:0) | SMPDB |
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| Chemical Formula | C41H71O8P |
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| Average Molecular Weight | 722.985 |
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| Monoisotopic Molecular Weight | 722.488656244 |
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| IUPAC Name | [(2R)-3-[(7Z,10Z,13Z,16Z,19Z)-docosa-7,10,13,16,19-pentaenoyloxy]-2-(hexadecanoyloxy)propoxy]phosphonic acid |
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| Traditional Name | (2R)-3-[(7Z,10Z,13Z,16Z,19Z)-docosa-7,10,13,16,19-pentaenoyloxy]-2-(hexadecanoyloxy)propoxyphosphonic acid |
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| CAS Registry Number | Not Available |
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| SMILES | [H][C@@](COC(=O)CCCCC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CC)(COP(O)(O)=O)OC(=O)CCCCCCCCCCCCCCC |
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| InChI Identifier | InChI=1S/C41H71O8P/c1-3-5-7-9-11-13-15-17-18-19-20-21-22-24-25-27-29-31-33-35-40(42)47-37-39(38-48-50(44,45)46)49-41(43)36-34-32-30-28-26-23-16-14-12-10-8-6-4-2/h5,7,11,13,17-18,20-21,24-25,39H,3-4,6,8-10,12,14-16,19,22-23,26-38H2,1-2H3,(H2,44,45,46)/b7-5-,13-11-,18-17-,21-20-,25-24-/t39-/m1/s1 |
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| InChI Key | JCUBMNMRLDVXNF-ZDHAVVAKSA-N |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as 1,2-diacylglycerol-3-phosphates. These are glycerol-3-phosphates in which the glycerol moiety is bonded to two aliphatic chains through ester linkages. |
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| Kingdom | Organic compounds |
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| Super Class | Lipids and lipid-like molecules |
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| Class | Glycerophospholipids |
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| Sub Class | Glycerophosphates |
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| Direct Parent | 1,2-diacylglycerol-3-phosphates |
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| Alternative Parents | |
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| Substituents | - 1,2-diacylglycerol-3-phosphate
- Fatty acid ester
- Monoalkyl phosphate
- Dicarboxylic acid or derivatives
- Fatty acyl
- Alkyl phosphate
- Phosphoric acid ester
- Organic phosphoric acid derivative
- Carboxylic acid ester
- Carboxylic acid derivative
- Hydrocarbon derivative
- Organic oxide
- Organic oxygen compound
- Carbonyl group
- Organooxygen compound
- Aliphatic acyclic compound
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| Molecular Framework | Aliphatic acyclic compounds |
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| External Descriptors | Not Available |
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| Ontology |
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| Physiological effect | Not Available |
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| Disposition | |
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| Process | Naturally occurring processBiological processBiochemical pathwayMetabolic pathway- Cardiolipin Biosynthesis CL(22:5(7Z,10Z,13Z,16Z,19Z)/16:0/22:5(7Z,10Z,13Z,16Z,19Z)/16:0) (PathBank: SMP0072458)
- Cardiolipin Biosynthesis CL(22:5(7Z,10Z,13Z,16Z,19Z)/16:0/22:5(7Z,10Z,13Z,16Z,19Z)/18:1(9Z)) (PathBank: SMP0080240)
- Cardiolipin Biosynthesis CL(22:5(7Z,10Z,13Z,16Z,19Z)/16:0/22:5(7Z,10Z,13Z,16Z,19Z)/18:1(11Z)) (PathBank: SMP0095512)
- Cardiolipin Biosynthesis CL(22:5(7Z,10Z,13Z,16Z,19Z)/16:0/22:5(7Z,10Z,13Z,16Z,19Z)/20:4(5Z,8Z,11Z,14Z)) (PathBank: SMP0095515)
- Cardiolipin Biosynthesis CL(22:5(7Z,10Z,13Z,16Z,19Z)/16:0/22:5(7Z,10Z,13Z,16Z,19Z)/22:5(7Z,10Z,13Z,16Z,19Z)) (PathBank: SMP0080244)
- Cardiolipin Biosynthesis CL(22:5(7Z,10Z,13Z,16Z,19Z)/16:0/22:5(7Z,10Z,13Z,16Z,19Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z)) (PathBank: SMP0080245)
- Cardiolipin Biosynthesis CL(22:5(7Z,10Z,13Z,16Z,19Z)/16:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z)) (PathBank: SMP0080249)
- Cardiolipin Biosynthesis CL(22:5(7Z,10Z,13Z,16Z,19Z)/16:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z)/22:5(7Z,10Z,13Z,16Z,19Z)) (PathBank: SMP0095521)
- Cardiolipin Biosynthesis CL(22:5(7Z,10Z,13Z,16Z,19Z)/16:0/22:5(7Z,10Z,13Z,16Z,19Z)/18:2(9Z,12Z)) (PathBank: SMP0072463)
- Cardiolipin Biosynthesis CL(22:5(7Z,10Z,13Z,16Z,19Z)/16:0/22:5(7Z,10Z,13Z,16Z,19Z)/22:5(4Z,7Z,10Z,13Z,16Z)) (PathBank: SMP0072465)
- Cardiolipin Biosynthesis CL(22:5(7Z,10Z,13Z,16Z,19Z)/16:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z)/16:0) (PathBank: SMP0072468)
- Cardiolipin Biosynthesis CL(22:5(7Z,10Z,13Z,16Z,19Z)/16:0/22:5(7Z,10Z,13Z,16Z,19Z)/16:1(9Z)) (PathBank: SMP0080237)
- Cardiolipin Biosynthesis CL(22:5(7Z,10Z,13Z,16Z,19Z)/16:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z)/22:5(4Z,7Z,10Z,13Z,16Z)) (PathBank: SMP0080247)
- Cardiolipin Biosynthesis CL(22:5(7Z,10Z,13Z,16Z,19Z)/16:0/22:5(7Z,10Z,13Z,16Z,19Z)/18:0) (PathBank: SMP0095511)
- De Novo Triacylglycerol Biosynthesis TG(22:5(7Z,10Z,13Z,16Z,19Z)/16:0/22:5(7Z,10Z,13Z,16Z,19Z)) (PathBank: SMP0016155)
- De Novo Triacylglycerol Biosynthesis TG(22:5(7Z,10Z,13Z,16Z,19Z)/16:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z)) (PathBank: SMP0016156)
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| Role | Not Available |
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| Physical Properties |
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| State | Solid |
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| Experimental Molecular Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Experimental Chromatographic Properties | Not Available |
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| Predicted Molecular Properties | |
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| Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Retention Times Underivatized| Chromatographic Method | Retention Time | Reference |
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| Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. | 6.62 minutes | 32390414 | | Predicted by Siyang on May 30, 2022 | 36.0242 minutes | 33406817 | | Predicted by Siyang using ReTip algorithm on June 8, 2022 | 1.89 minutes | 32390414 | | Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid | 5205.1 seconds | 40023050 | | Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid | 504.4 seconds | 40023050 | | Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid | 339.4 seconds | 40023050 | | Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid | 296.4 seconds | 40023050 | | RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 1180.8 seconds | 40023050 | | Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid | 1909.0 seconds | 40023050 | | BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid | 1200.2 seconds | 40023050 | | HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate) | 206.2 seconds | 40023050 | | UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid | 3653.6 seconds | 40023050 | | BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid | 1213.8 seconds | 40023050 | | UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid | 2897.5 seconds | 40023050 | | SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 1395.7 seconds | 40023050 | | RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 748.5 seconds | 40023050 | | MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate | 451.2 seconds | 40023050 | | KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA | 824.5 seconds | 40023050 | | Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water | 11.1 seconds | 40023050 |
Predicted Kovats Retention IndicesUnderivatized| Metabolite | SMILES | Kovats RI Value | Column Type | Reference |
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| PA(22:5(7Z,10Z,13Z,16Z,19Z)/16:0) | [H][C@@](COC(=O)CCCCC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CC)(COP(O)(O)=O)OC(=O)CCCCCCCCCCCCCCC | 5184.8 | Standard polar | 33892256 | | PA(22:5(7Z,10Z,13Z,16Z,19Z)/16:0) | [H][C@@](COC(=O)CCCCC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CC)(COP(O)(O)=O)OC(=O)CCCCCCCCCCCCCCC | 4438.4 | Standard non polar | 33892256 | | PA(22:5(7Z,10Z,13Z,16Z,19Z)/16:0) | [H][C@@](COC(=O)CCCCC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CC)(COP(O)(O)=O)OC(=O)CCCCCCCCCCCCCCC | 5128.7 | Semi standard non polar | 33892256 |
Derivatized| Derivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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| PA(22:5(7Z,10Z,13Z,16Z,19Z)/16:0),1TMS,isomer #1 | CC/C=C\C/C=C\C/C=C\C/C=C\C/C=C\CCCCCC(=O)OC[C@H](COP(=O)(O)O[Si](C)(C)C)OC(=O)CCCCCCCCCCCCCCC | 5143.1 | Semi standard non polar | 33892256 | | PA(22:5(7Z,10Z,13Z,16Z,19Z)/16:0),1TMS,isomer #1 | CC/C=C\C/C=C\C/C=C\C/C=C\C/C=C\CCCCCC(=O)OC[C@H](COP(=O)(O)O[Si](C)(C)C)OC(=O)CCCCCCCCCCCCCCC | 4558.9 | Standard non polar | 33892256 | | PA(22:5(7Z,10Z,13Z,16Z,19Z)/16:0),1TMS,isomer #1 | CC/C=C\C/C=C\C/C=C\C/C=C\C/C=C\CCCCCC(=O)OC[C@H](COP(=O)(O)O[Si](C)(C)C)OC(=O)CCCCCCCCCCCCCCC | 5685.2 | Standard polar | 33892256 | | PA(22:5(7Z,10Z,13Z,16Z,19Z)/16:0),2TMS,isomer #1 | CC/C=C\C/C=C\C/C=C\C/C=C\C/C=C\CCCCCC(=O)OC[C@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CCCCCCCCCCCCCCC | 5110.0 | Semi standard non polar | 33892256 | | PA(22:5(7Z,10Z,13Z,16Z,19Z)/16:0),2TMS,isomer #1 | CC/C=C\C/C=C\C/C=C\C/C=C\C/C=C\CCCCCC(=O)OC[C@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CCCCCCCCCCCCCCC | 4526.3 | Standard non polar | 33892256 | | PA(22:5(7Z,10Z,13Z,16Z,19Z)/16:0),2TMS,isomer #1 | CC/C=C\C/C=C\C/C=C\C/C=C\C/C=C\CCCCCC(=O)OC[C@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CCCCCCCCCCCCCCC | 4954.1 | Standard polar | 33892256 | | PA(22:5(7Z,10Z,13Z,16Z,19Z)/16:0),1TBDMS,isomer #1 | CC/C=C\C/C=C\C/C=C\C/C=C\C/C=C\CCCCCC(=O)OC[C@H](COP(=O)(O)O[Si](C)(C)C(C)(C)C)OC(=O)CCCCCCCCCCCCCCC | 5357.3 | Semi standard non polar | 33892256 | | PA(22:5(7Z,10Z,13Z,16Z,19Z)/16:0),1TBDMS,isomer #1 | CC/C=C\C/C=C\C/C=C\C/C=C\C/C=C\CCCCCC(=O)OC[C@H](COP(=O)(O)O[Si](C)(C)C(C)(C)C)OC(=O)CCCCCCCCCCCCCCC | 4665.1 | Standard non polar | 33892256 | | PA(22:5(7Z,10Z,13Z,16Z,19Z)/16:0),1TBDMS,isomer #1 | CC/C=C\C/C=C\C/C=C\C/C=C\C/C=C\CCCCCC(=O)OC[C@H](COP(=O)(O)O[Si](C)(C)C(C)(C)C)OC(=O)CCCCCCCCCCCCCCC | 5664.2 | Standard polar | 33892256 |
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| MS/MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
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| Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(22:5(7Z,10Z,13Z,16Z,19Z)/16:0) 10V, Positive-QTOF | splash10-07ii-1279403600-e9ae9ce8295f144f05aa | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(22:5(7Z,10Z,13Z,16Z,19Z)/16:0) 20V, Positive-QTOF | splash10-03ds-2297202000-a18b4f7a2c161f3fd24b | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(22:5(7Z,10Z,13Z,16Z,19Z)/16:0) 40V, Positive-QTOF | splash10-01pa-1498003000-7da6188ec7bbff7acacc | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(22:5(7Z,10Z,13Z,16Z,19Z)/16:0) 10V, Negative-QTOF | splash10-01t9-4039300300-70a43761eb9e7df72a28 | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(22:5(7Z,10Z,13Z,16Z,19Z)/16:0) 20V, Negative-QTOF | splash10-004i-9014000000-3b4d39d936e03f636aad | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(22:5(7Z,10Z,13Z,16Z,19Z)/16:0) 40V, Negative-QTOF | splash10-004i-9000000000-2714e4b89b14d6e7bd10 | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(22:5(7Z,10Z,13Z,16Z,19Z)/16:0) 10V, Positive-QTOF | splash10-0ab9-0000000900-7954a08116ed6bddb705 | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(22:5(7Z,10Z,13Z,16Z,19Z)/16:0) 20V, Positive-QTOF | splash10-00fr-0000005900-8efe52195da8bbe88870 | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(22:5(7Z,10Z,13Z,16Z,19Z)/16:0) 40V, Positive-QTOF | splash10-00ou-0006609300-5f5e8e4ef488f26de7b2 | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(22:5(7Z,10Z,13Z,16Z,19Z)/16:0) 10V, Negative-QTOF | splash10-00di-0000000900-8021e9daadeb1989f632 | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(22:5(7Z,10Z,13Z,16Z,19Z)/16:0) 20V, Negative-QTOF | splash10-06ml-1149900600-5e6a7dcf58d4f08b5cda | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(22:5(7Z,10Z,13Z,16Z,19Z)/16:0) 40V, Negative-QTOF | splash10-056r-1159300100-f626fb13a37fa14f9a02 | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(22:5(7Z,10Z,13Z,16Z,19Z)/16:0) 10V, Positive-QTOF | splash10-0002-0000000900-3c6297c8e75d148e84fe | 2021-09-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(22:5(7Z,10Z,13Z,16Z,19Z)/16:0) 20V, Positive-QTOF | splash10-0002-0000009900-bf69caf620d90cd37f0a | 2021-09-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(22:5(7Z,10Z,13Z,16Z,19Z)/16:0) 40V, Positive-QTOF | splash10-00kk-0000922400-4b4e081903768ecbb697 | 2021-09-23 | Wishart Lab | View Spectrum |
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