| Record Information |
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| Version | 5.0 |
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| Status | Expected but not Quantified |
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| Creation Date | 2017-09-09 05:12:43 UTC |
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| Update Date | 2022-11-30 19:26:16 UTC |
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| HMDB ID | HMDB0115605 |
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| Secondary Accession Numbers | None |
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| Metabolite Identification |
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| Common Name | PA(24:1(15Z)/20:3(8Z,11Z,14Z)) |
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| Description | PA(24:1(15Z)/20:3(8Z,11Z,14Z)) is a phosphatidic acid. It is a glycerophospholipid in which a phosphate moiety occupies a glycerol substitution site. As is the case with diacylglycerols, phosphatidic acids can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. Fatty acids containing 16, 18 and 20 carbons are the most common. PA(24:1(15Z)/20:3(8Z,11Z,14Z)), in particular, consists of one chain of nervonic acid at the C-1 position and one chain of dihomo-gamma-linolenic acid at the C-2 position. Phosphatidic acids are quite rare but are extremely important as intermediates in the biosynthesis of triacylglycerols and phospholipids. |
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| Structure | [H][C@@](COC(=O)CCCCCCCCCCCCC\C=C/CCCCCCCC)(COP(O)(O)=O)OC(=O)CCCCCC\C=C/C\C=C/C\C=C/CCCCC InChI=1S/C47H85O8P/c1-3-5-7-9-11-13-15-17-19-21-22-23-24-26-27-29-31-33-35-37-39-41-46(48)53-43-45(44-54-56(50,51)52)55-47(49)42-40-38-36-34-32-30-28-25-20-18-16-14-12-10-8-6-4-2/h12,14,17-20,28,30,45H,3-11,13,15-16,21-27,29,31-44H2,1-2H3,(H2,50,51,52)/b14-12-,19-17-,20-18-,30-28-/t45-/m1/s1 |
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| Synonyms | | Value | Source |
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| 1-Nervonoyl-2-dihomo-gamma-linolenoyl-sn-glycero-3-phosphate | HMDB | | 1-Nervonoyl-2-dihomo-gamma-linolenoyl-sn-phosphatidic acid | HMDB | | PA(24:1/20:3) | HMDB | | PA(24:1N9/20:3N6) | HMDB | | PA(24:1W9/20:3W6) | HMDB | | PA(44:4) | HMDB | | Phosphatidic acid(24:1(15Z)/20:3(8Z,11Z,14Z)) | HMDB | | Phosphatidic acid(24:1/20:3) | HMDB | | Phosphatidic acid(24:1n9/20:3n6) | HMDB | | Phosphatidic acid(24:1W9/20:3W6) | HMDB | | Phosphatidic acid(44:4) | HMDB | | Phosphatidate(24:1(15Z)/20:3(8Z,11Z,14Z)) | HMDB | | Phosphatidate(24:1/20:3) | HMDB | | Phosphatidate(24:1N9/20:3N6) | HMDB | | Phosphatidate(24:1W9/20:3W6) | HMDB | | Phosphatidate(44:4) | HMDB | | [(2R)-2-[(8Z,11Z,14Z)-Icosa-8,11,14-trienoyloxy]-3-[(15Z)-tetracos-15-enoyloxy]propoxy]phosphonate | HMDB | | PA(24:1(15Z)/20:3(8Z,11Z,14Z)) | SMPDB |
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| Chemical Formula | C47H85O8P |
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| Average Molecular Weight | 809.163 |
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| Monoisotopic Molecular Weight | 808.598206695 |
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| IUPAC Name | [(2R)-2-[(8Z,11Z,14Z)-icosa-8,11,14-trienoyloxy]-3-[(15Z)-tetracos-15-enoyloxy]propoxy]phosphonic acid |
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| Traditional Name | (2R)-2-[(8Z,11Z,14Z)-icosa-8,11,14-trienoyloxy]-3-[(15Z)-tetracos-15-enoyloxy]propoxyphosphonic acid |
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| CAS Registry Number | Not Available |
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| SMILES | [H][C@@](COC(=O)CCCCCCCCCCCCC\C=C/CCCCCCCC)(COP(O)(O)=O)OC(=O)CCCCCC\C=C/C\C=C/C\C=C/CCCCC |
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| InChI Identifier | InChI=1S/C47H85O8P/c1-3-5-7-9-11-13-15-17-19-21-22-23-24-26-27-29-31-33-35-37-39-41-46(48)53-43-45(44-54-56(50,51)52)55-47(49)42-40-38-36-34-32-30-28-25-20-18-16-14-12-10-8-6-4-2/h12,14,17-20,28,30,45H,3-11,13,15-16,21-27,29,31-44H2,1-2H3,(H2,50,51,52)/b14-12-,19-17-,20-18-,30-28-/t45-/m1/s1 |
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| InChI Key | TZOYYYGNSAXHCL-OTOBTDNBSA-N |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as 1,2-diacylglycerol-3-phosphates. These are glycerol-3-phosphates in which the glycerol moiety is bonded to two aliphatic chains through ester linkages. |
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| Kingdom | Organic compounds |
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| Super Class | Lipids and lipid-like molecules |
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| Class | Glycerophospholipids |
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| Sub Class | Glycerophosphates |
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| Direct Parent | 1,2-diacylglycerol-3-phosphates |
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| Alternative Parents | |
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| Substituents | - 1,2-diacylglycerol-3-phosphate
- Fatty acid ester
- Monoalkyl phosphate
- Dicarboxylic acid or derivatives
- Fatty acyl
- Alkyl phosphate
- Phosphoric acid ester
- Organic phosphoric acid derivative
- Carboxylic acid ester
- Carboxylic acid derivative
- Hydrocarbon derivative
- Organic oxide
- Organic oxygen compound
- Carbonyl group
- Organooxygen compound
- Aliphatic acyclic compound
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| Molecular Framework | Aliphatic acyclic compounds |
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| External Descriptors | Not Available |
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| Ontology |
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| Physiological effect | Not Available |
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| Disposition | |
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| Process | Naturally occurring processBiological processBiochemical pathwayMetabolic pathway- De Novo Triacylglycerol Biosynthesis TG(24:1(15Z)/20:3(8Z,11Z,14Z)/18:2(9Z,12Z)) (PathBank: SMP0037112)
- De Novo Triacylglycerol Biosynthesis TG(24:1(15Z)/20:3(8Z,11Z,14Z)/18:3(6Z,9Z,12Z)) (PathBank: SMP0037113)
- De Novo Triacylglycerol Biosynthesis TG(24:1(15Z)/20:3(8Z,11Z,14Z)/18:3(9Z,12Z,15Z)) (PathBank: SMP0037114)
- De Novo Triacylglycerol Biosynthesis TG(24:1(15Z)/20:3(8Z,11Z,14Z)/18:4(6Z,9Z,12Z,15Z)) (PathBank: SMP0037115)
- De Novo Triacylglycerol Biosynthesis TG(24:1(15Z)/20:3(8Z,11Z,14Z)/20:2(11Z,14Z)) (PathBank: SMP0037116)
- De Novo Triacylglycerol Biosynthesis TG(24:1(15Z)/20:3(8Z,11Z,14Z)/20:3(8Z,11Z,14Z)) (PathBank: SMP0037117)
- De Novo Triacylglycerol Biosynthesis TG(24:1(15Z)/20:3(8Z,11Z,14Z)/20:4(5Z,8Z,11Z,14Z)) (PathBank: SMP0037118)
- De Novo Triacylglycerol Biosynthesis TG(24:1(15Z)/20:3(8Z,11Z,14Z)/20:4(8Z,11Z,14Z,17Z)) (PathBank: SMP0037119)
- De Novo Triacylglycerol Biosynthesis TG(24:1(15Z)/20:3(8Z,11Z,14Z)/20:5(5Z,8Z,11Z,14Z,17Z)) (PathBank: SMP0037120)
- De Novo Triacylglycerol Biosynthesis TG(24:1(15Z)/20:3(8Z,11Z,14Z)/22:2(13Z,16Z)) (PathBank: SMP0037121)
- De Novo Triacylglycerol Biosynthesis TG(24:1(15Z)/20:3(8Z,11Z,14Z)/22:4(7Z,10Z,13Z,16Z)) (PathBank: SMP0037122)
- De Novo Triacylglycerol Biosynthesis TG(24:1(15Z)/20:3(8Z,11Z,14Z)/22:5(4Z,7Z,10Z,13Z,16Z)) (PathBank: SMP0037123)
- De Novo Triacylglycerol Biosynthesis TG(24:1(15Z)/20:3(8Z,11Z,14Z)/22:5(7Z,10Z,13Z,16Z,19Z)) (PathBank: SMP0037124)
- De Novo Triacylglycerol Biosynthesis TG(24:1(15Z)/20:3(8Z,11Z,14Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z)) (PathBank: SMP0037125)
- De Novo Triacylglycerol Biosynthesis TG(24:1(15Z)/20:3(8Z,11Z,14Z)/24:1(15Z)) (PathBank: SMP0037126)
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| Role | Not Available |
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| Physical Properties |
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| State | Solid |
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| Experimental Molecular Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Experimental Chromatographic Properties | Not Available |
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| Predicted Molecular Properties | |
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| Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Retention Times Underivatized| Chromatographic Method | Retention Time | Reference |
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| Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. | 6.66 minutes | 32390414 | | Predicted by Siyang on May 30, 2022 | 43.1739 minutes | 33406817 | | Predicted by Siyang using ReTip algorithm on June 8, 2022 | 2.0 minutes | 32390414 | | Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid | 5976.4 seconds | 40023050 | | Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid | 720.4 seconds | 40023050 | | Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid | 420.8 seconds | 40023050 | | Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid | 352.5 seconds | 40023050 | | RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 1310.9 seconds | 40023050 | | Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid | 2209.2 seconds | 40023050 | | BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid | 1460.8 seconds | 40023050 | | HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate) | 250.6 seconds | 40023050 | | UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid | 4391.1 seconds | 40023050 | | BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid | 1345.2 seconds | 40023050 | | UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid | 3331.4 seconds | 40023050 | | SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 1657.8 seconds | 40023050 | | RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 856.3 seconds | 40023050 | | MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate | 687.9 seconds | 40023050 | | KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA | 1013.7 seconds | 40023050 | | Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water | 11.4 seconds | 40023050 |
Predicted Kovats Retention IndicesUnderivatizedDerivatized| Derivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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| PA(24:1(15Z)/20:3(8Z,11Z,14Z)),1TMS,isomer #1 | CCCCC/C=C\C/C=C\C/C=C\CCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCCC/C=C\CCCCCCCC)COP(=O)(O)O[Si](C)(C)C | 5774.9 | Semi standard non polar | 33892256 | | PA(24:1(15Z)/20:3(8Z,11Z,14Z)),1TMS,isomer #1 | CCCCC/C=C\C/C=C\C/C=C\CCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCCC/C=C\CCCCCCCC)COP(=O)(O)O[Si](C)(C)C | 5011.5 | Standard non polar | 33892256 | | PA(24:1(15Z)/20:3(8Z,11Z,14Z)),1TMS,isomer #1 | CCCCC/C=C\C/C=C\C/C=C\CCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCCC/C=C\CCCCCCCC)COP(=O)(O)O[Si](C)(C)C | 6155.9 | Standard polar | 33892256 |
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| MS/MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
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| Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(24:1(15Z)/20:3(8Z,11Z,14Z)) 10V, Positive-QTOF | splash10-0a4v-1159550640-228835e9d942147a417d | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(24:1(15Z)/20:3(8Z,11Z,14Z)) 20V, Positive-QTOF | splash10-000b-3259521400-d6714406c9bdc59270b5 | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(24:1(15Z)/20:3(8Z,11Z,14Z)) 40V, Positive-QTOF | splash10-05fs-2168903300-8b6abd6713d429df64a6 | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(24:1(15Z)/20:3(8Z,11Z,14Z)) 10V, Negative-QTOF | splash10-0ar1-3009020020-e7e33dd81deda8f1ce77 | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(24:1(15Z)/20:3(8Z,11Z,14Z)) 20V, Negative-QTOF | splash10-004j-9005000000-94cb12b423c151bf45fb | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(24:1(15Z)/20:3(8Z,11Z,14Z)) 40V, Negative-QTOF | splash10-004i-9000000000-3886e1c1f6c98389e422 | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(24:1(15Z)/20:3(8Z,11Z,14Z)) 10V, Positive-QTOF | splash10-052f-0000000950-a4ed89e77ef60435a614 | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(24:1(15Z)/20:3(8Z,11Z,14Z)) 20V, Positive-QTOF | splash10-0bt9-0000000790-c8faff4bfefc4b35a2d7 | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(24:1(15Z)/20:3(8Z,11Z,14Z)) 40V, Positive-QTOF | splash10-0ikc-0000550910-32518ea61004a5fd1044 | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(24:1(15Z)/20:3(8Z,11Z,14Z)) 10V, Negative-QTOF | splash10-0a4i-0000000090-25a26d12686e83b1ac92 | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(24:1(15Z)/20:3(8Z,11Z,14Z)) 20V, Negative-QTOF | splash10-0pb9-1109570060-5c5bac225e2712a17a2f | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(24:1(15Z)/20:3(8Z,11Z,14Z)) 40V, Negative-QTOF | splash10-066r-0009110000-64ccba5d90759a52cbdd | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(24:1(15Z)/20:3(8Z,11Z,14Z)) 10V, Positive-QTOF | splash10-001i-0000000090-3d40e97641ee6161a680 | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(24:1(15Z)/20:3(8Z,11Z,14Z)) 20V, Positive-QTOF | splash10-001i-0000000990-bb9f4546d984fdf3c1a9 | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(24:1(15Z)/20:3(8Z,11Z,14Z)) 40V, Positive-QTOF | splash10-001i-0000990460-dc4791d21849a80b15e5 | 2021-09-25 | Wishart Lab | View Spectrum |
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