| Record Information |
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| Version | 5.0 |
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| Status | Expected but not Quantified |
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| Creation Date | 2017-09-09 05:40:17 UTC |
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| Update Date | 2022-11-30 19:26:20 UTC |
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| HMDB ID | HMDB0115745 |
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| Secondary Accession Numbers | None |
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| Metabolite Identification |
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| Common Name | PA(a-25:0/10:0) |
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| Description | PA(a-25:0/10:0) is a phosphatidic acid. It is a glycerophospholipid in which a phosphate moiety occupies a glycerol substitution site. As is the case with diacylglycerols, phosphatidic acids can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. Fatty acids containing 16, 18 and 20 carbons are the most common. PA(a-25:0/10:0), in particular, consists of one chain of anteisopentacosanoic acid at the C-1 position and one chain of capric acid at the C-2 position. Phosphatidic acids are quite rare but are extremely important as intermediates in the biosynthesis of triacylglycerols and phospholipids. |
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| Structure | [H][C@@](COC(=O)CCCCCCCCCCCCCCCCCCCCC(C)CC)(COP(O)(O)=O)OC(=O)CCCCCCCCC InChI=1S/C38H75O8P/c1-4-6-7-8-21-26-29-32-38(40)46-36(34-45-47(41,42)43)33-44-37(39)31-28-25-23-20-18-16-14-12-10-9-11-13-15-17-19-22-24-27-30-35(3)5-2/h35-36H,4-34H2,1-3H3,(H2,41,42,43)/t35?,36-/m1/s1 |
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| Synonyms | | Value | Source |
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| 1-Anteisopentacosanoyl-2-decanoyl-sn-glycero-3-phosphate | HMDB | | 1-Anteisopentacosanoyl-2-decanoyl-sn-phosphatidic acid | HMDB | | PA(35:0) | HMDB | | Phosphatidic acid(a-25:0/10:0) | HMDB | | Phosphatidic acid(35:0) | HMDB | | Phosphatidate(A-25:0/10:0) | HMDB | | Phosphatidate(35:0) | HMDB | | [(2R)-2-(Decanoyloxy)-3-[(22-methyltetracosanoyl)oxy]propoxy]phosphonate | HMDB | | PA(a-25:0/10:0) | SMPDB |
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| Chemical Formula | C38H75O8P |
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| Average Molecular Weight | 690.984 |
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| Monoisotopic Molecular Weight | 690.519956373 |
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| IUPAC Name | [(2R)-2-(decanoyloxy)-3-[(22-methyltetracosanoyl)oxy]propoxy]phosphonic acid |
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| Traditional Name | (2R)-2-(decanoyloxy)-3-[(22-methyltetracosanoyl)oxy]propoxyphosphonic acid |
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| CAS Registry Number | Not Available |
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| SMILES | [H][C@@](COC(=O)CCCCCCCCCCCCCCCCCCCCC(C)CC)(COP(O)(O)=O)OC(=O)CCCCCCCCC |
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| InChI Identifier | InChI=1S/C38H75O8P/c1-4-6-7-8-21-26-29-32-38(40)46-36(34-45-47(41,42)43)33-44-37(39)31-28-25-23-20-18-16-14-12-10-9-11-13-15-17-19-22-24-27-30-35(3)5-2/h35-36H,4-34H2,1-3H3,(H2,41,42,43)/t35?,36-/m1/s1 |
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| InChI Key | USNUAGZLQNTXNL-BEBVUIBBSA-N |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as 1,2-diacylglycerol-3-phosphates. These are glycerol-3-phosphates in which the glycerol moiety is bonded to two aliphatic chains through ester linkages. |
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| Kingdom | Organic compounds |
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| Super Class | Lipids and lipid-like molecules |
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| Class | Glycerophospholipids |
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| Sub Class | Glycerophosphates |
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| Direct Parent | 1,2-diacylglycerol-3-phosphates |
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| Alternative Parents | |
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| Substituents | - 1,2-diacylglycerol-3-phosphate
- Fatty acid ester
- Monoalkyl phosphate
- Dicarboxylic acid or derivatives
- Fatty acyl
- Alkyl phosphate
- Phosphoric acid ester
- Organic phosphoric acid derivative
- Carboxylic acid ester
- Carboxylic acid derivative
- Hydrocarbon derivative
- Organic oxide
- Organic oxygen compound
- Carbonyl group
- Organooxygen compound
- Aliphatic acyclic compound
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| Molecular Framework | Aliphatic acyclic compounds |
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| External Descriptors | Not Available |
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| Ontology |
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| Physiological effect | Not Available |
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| Disposition | |
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| Process | |
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| Role | Not Available |
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| Physical Properties |
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| State | Solid |
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| Experimental Molecular Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Experimental Chromatographic Properties | Not Available |
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| Predicted Molecular Properties | |
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| Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Retention Times Underivatized| Chromatographic Method | Retention Time | Reference |
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| Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022. | 10.52 minutes | 32390414 | | Predicted by Siyang on May 30, 2022 | 34.106 minutes | 33406817 | | Predicted by Siyang using ReTip algorithm on June 8, 2022 | 2.3 minutes | 32390414 | | Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid | 4935.3 seconds | 40023050 | | Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid | 624.1 seconds | 40023050 | | Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid | 370.5 seconds | 40023050 | | Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid | 238.9 seconds | 40023050 | | RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 985.8 seconds | 40023050 | | Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid | 1727.5 seconds | 40023050 | | BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid | 1568.7 seconds | 40023050 | | HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate) | 178.3 seconds | 40023050 | | UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid | 3359.7 seconds | 40023050 | | BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid | 1075.3 seconds | 40023050 | | UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid | 2855.1 seconds | 40023050 | | SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 1280.3 seconds | 40023050 | | RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 715.1 seconds | 40023050 | | MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate | 709.4 seconds | 40023050 | | KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA | 761.6 seconds | 40023050 | | Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water | 9.2 seconds | 40023050 |
Predicted Kovats Retention IndicesUnderivatizedDerivatized| Derivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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| PA(a-25:0/10:0),1TMS,isomer #1 | CCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCCCCCCCCCCC(C)CC)COP(=O)(O)O[Si](C)(C)C | 4775.8 | Semi standard non polar | 33892256 | | PA(a-25:0/10:0),1TMS,isomer #1 | CCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCCCCCCCCCCC(C)CC)COP(=O)(O)O[Si](C)(C)C | 4186.9 | Standard non polar | 33892256 | | PA(a-25:0/10:0),1TMS,isomer #1 | CCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCCCCCCCCCCC(C)CC)COP(=O)(O)O[Si](C)(C)C | 5758.8 | Standard polar | 33892256 | | PA(a-25:0/10:0),2TMS,isomer #1 | CCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCCCCCCCCCCC(C)CC)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C | 4765.0 | Semi standard non polar | 33892256 | | PA(a-25:0/10:0),2TMS,isomer #1 | CCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCCCCCCCCCCC(C)CC)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C | 4206.6 | Standard non polar | 33892256 | | PA(a-25:0/10:0),2TMS,isomer #1 | CCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCCCCCCCCCCC(C)CC)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C | 5040.7 | Standard polar | 33892256 | | PA(a-25:0/10:0),1TBDMS,isomer #1 | CCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCCCCCCCCCCC(C)CC)COP(=O)(O)O[Si](C)(C)C(C)(C)C | 5013.1 | Semi standard non polar | 33892256 | | PA(a-25:0/10:0),1TBDMS,isomer #1 | CCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCCCCCCCCCCC(C)CC)COP(=O)(O)O[Si](C)(C)C(C)(C)C | 4315.4 | Standard non polar | 33892256 | | PA(a-25:0/10:0),1TBDMS,isomer #1 | CCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCCCCCCCCCCC(C)CC)COP(=O)(O)O[Si](C)(C)C(C)(C)C | 5722.6 | Standard polar | 33892256 |
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| GC-MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
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| Predicted GC-MS | Predicted GC-MS Spectrum - PA(a-25:0/10:0) GC-MS (Non-derivatized) - 70eV, Positive | Not Available | 2021-10-13 | Wishart Lab | View Spectrum |
MS/MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
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| Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(a-25:0/10:0) 10V, Positive-QTOF | splash10-06dl-2908176000-b554883d41bb6452dae6 | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(a-25:0/10:0) 20V, Positive-QTOF | splash10-066s-5907232000-438cc06c3121a3397034 | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(a-25:0/10:0) 40V, Positive-QTOF | splash10-0079-9717531000-d4e6d22385eaa9937dcc | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(a-25:0/10:0) 10V, Negative-QTOF | splash10-01zi-4309022000-3d3ca2e3999a05ae6345 | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(a-25:0/10:0) 20V, Negative-QTOF | splash10-004i-9105000000-d0359813e76880bbc192 | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(a-25:0/10:0) 40V, Negative-QTOF | splash10-004i-9000000000-bd1d0ca4c970db792439 | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(a-25:0/10:0) 10V, Positive-QTOF | splash10-00dl-0000009000-fe74d113dc27ecc6707e | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(a-25:0/10:0) 20V, Positive-QTOF | splash10-0006-0000059000-aa583eb78935ba402cd4 | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(a-25:0/10:0) 40V, Positive-QTOF | splash10-05mo-0003091000-584462ff4fe105df48ee | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(a-25:0/10:0) 10V, Negative-QTOF | splash10-000i-0000009000-11c33cb7dc615be3a690 | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(a-25:0/10:0) 20V, Negative-QTOF | splash10-05ui-1509065000-a2cef80244e005545e97 | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(a-25:0/10:0) 40V, Negative-QTOF | splash10-0089-1509021000-b6229ee6d75c0c43d566 | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(a-25:0/10:0) 10V, Positive-QTOF | splash10-03di-0000000900-111f38baecb5a57a693d | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(a-25:0/10:0) 20V, Positive-QTOF | splash10-04i0-0000009900-14b608d66b52e97b2607 | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(a-25:0/10:0) 40V, Positive-QTOF | splash10-07c7-0008094500-f9c3c2561ef489db7993 | 2021-09-24 | Wishart Lab | View Spectrum |
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