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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2017-09-09 07:16:38 UTC

Update Date

2022-11-30 19:26:29 UTC

HMDB ID

HMDB0116161

Secondary Accession Numbers

None

Metabolite Identification

Common Name

CDP-DG(i-12:0/i-16:0)

Description

CDP-DG(i-12:0/i-16:0) is a cytidine diphosphate diacylglycerol or CDP-diacylglycerol (CDP-DG). CDP-diacylglycerol is an important branchpoint intermediate in eukaryotic phospholipid biosynthesis and could be a key regulatory molecule in phospholipid metabolism. It is a glycerophospholipid in which a cytidine diphosphate moiety occupies a glycerol substitution site. As is the case with diacylglycerols, CDP-diacylglycerols can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. Fatty acids containing 16, 18 and 20 carbons are the most common. CDP-DG(i-12:0/i-16:0), in particular, consists of one chain of isododecanoic acid at the C-1 position and one chain of isohexadecanoic acid at the C-2 position. Cytidine diphosphate diacylglycerols are rarely noticed in analyses of lipid compositions of tissues, as they are present is such small amounts (perhaps only 0.05% or so of the total phospholipids).

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

CDP-DG(i-12:0/i-16:0)
  Mrv1652309161722312D          

 61 62  0  0  1  0            999 V2000
   17.4451   -4.0157    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.4838   -4.5706    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   15.5226   -4.0157    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.4061   -4.5706    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.5612   -4.5706    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.7337   -5.6806    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.3206   -5.7230    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   19.4768   -4.2072    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   19.4768   -5.3368    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.8027   -4.5411    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.4768   -3.1857    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.8732   -4.1777    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   21.8732   -5.3072    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.1992   -4.5116    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.8732   -3.1563    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   25.1589   -6.7486    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   26.8306   -6.7486    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   27.7371   -5.8702    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   26.0550   -5.2081    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   24.1058   -5.8608    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   26.8357   -7.5484    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   25.1528   -7.5601    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   24.1017   -5.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.4120   -3.3822    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   28.4120   -4.2072    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   27.6975   -2.9697    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   27.6975   -4.6197    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   26.9830   -3.3822    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   26.9830   -4.2072    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   27.6976   -2.1447    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   29.1119   -4.5018    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.8468   -4.1581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.8468   -3.3867    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.1327   -4.5712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.4185   -4.1581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.7044   -4.5712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.9903   -4.1581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2762   -4.5712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5620   -4.1581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8479   -4.5712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1337   -4.1581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4196   -4.5712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7054   -4.1581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7054   -4.9831    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.0193   -6.0931    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.0193   -6.8646    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.3052   -5.6800    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.5910   -6.0931    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.8769   -5.6800    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.1627   -6.0931    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.4486   -5.6800    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7344   -6.0931    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0203   -5.6800    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3062   -6.0931    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5920   -5.6800    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8779   -6.0931    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1637   -5.6800    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4496   -6.0931    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7354   -5.6800    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0213   -6.0931    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0213   -5.2681    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  2  6  1  0  0  0  0
  2  7  1  1  0  0  0
  3  2  1  0  0  0  0
  4  1  1  0  0  0  0
  5  3  1  0  0  0  0
  8  4  1  0  0  0  0
  8  9  1  0  0  0  0
  8 10  1  0  0  0  0
  8 11  2  0  0  0  0
 12 10  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
 12 15  2  0  0  0  0
 14 23  1  0  0  0  0
 16 17  1  0  0  0  0
 16 22  1  1  0  0  0
 18 19  1  0  0  0  0
 18 17  1  0  0  0  0
 18 27  1  1  0  0  0
 19 20  1  0  0  0  0
 20 16  1  0  0  0  0
 20 23  1  1  0  0  0
 21 17  1  0  0  0  0
 24 25  1  0  0  0  0
 24 26  2  0  0  0  0
 25 27  1  0  0  0  0
 25 31  2  0  0  0  0
 26 28  1  0  0  0  0
 26 30  1  0  0  0  0
 27 29  1  0  0  0  0
 28 29  2  0  0  0  0
 32  5  1  0  0  0  0
 32 33  2  0  0  0  0
 32 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 42 44  1  0  0  0  0
 45  6  1  0  0  0  0
 45 46  2  0  0  0  0
 45 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 49 50  1  0  0  0  0
 50 51  1  0  0  0  0
 51 52  1  0  0  0  0
 52 53  1  0  0  0  0
 53 54  1  0  0  0  0
 54 55  1  0  0  0  0
 55 56  1  0  0  0  0
 56 57  1  0  0  0  0
 57 58  1  0  0  0  0
 58 59  1  0  0  0  0
 59 60  1  0  0  0  0
 59 61  1  0  0  0  0
M  END

HMDB0116161
     RDKit          3D
CDP-DG(i-12:0/i-16:0)
133134  0  0  0  0  0  0  0  0999 V2000
    2.9921   -5.5866    5.7834 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6521   -5.0579    4.4176 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9163   -4.9496    3.5794 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0235   -3.6919    4.4386 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7322   -3.6340    5.2139 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3065   -4.5617    4.6467 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5833   -4.5211    5.3972 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3290   -3.2735    5.5698 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8827   -2.5071    4.4405 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8837   -1.9614    3.5038 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5147   -1.1423    2.3829 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4830   -1.9171    1.5471 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0815   -1.0644    0.4530 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0847   -1.8302   -0.3852 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6756   -0.9443   -1.4623 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6905   -0.4218   -2.4156 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7313   -0.8970   -3.6022 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7336    0.5294   -2.1394 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8509    0.9614   -3.1215 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4731    0.3204   -2.8425 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6038    0.8214   -3.8487 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7293    0.3907   -3.9247 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0549   -0.4445   -3.0693 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5524    0.9575   -4.9696 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8670    0.3919   -5.3125 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9736   -0.9605   -5.8679 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5993   -2.1569   -5.1093 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4246   -2.4431   -3.8625 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8602   -2.6568   -4.1852 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7367   -2.9628   -3.0429 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6989   -4.2024   -2.2900 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5118   -4.7280   -1.6141 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8586   -3.8265   -0.6033 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5748   -5.5940   -2.3841 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7061    2.4277   -3.2921 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8540    3.0924   -3.6232 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6699    4.7350   -3.8190 P   0  0  0  0  0  5  0  0  0  0  0  0
   -3.4182    5.4801   -2.5398 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1523    5.3309   -4.4378 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4893    5.1576   -4.9268 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0626    5.7106   -4.2747 P   0  0  0  0  0  5  0  0  0  0  0  0
   -0.4718    6.7032   -5.2873 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1044    4.4649   -4.1551 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2385    6.5371   -2.8368 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6433    5.9231   -1.7566 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8133    6.6825   -0.4776 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1978    6.0157    0.5820 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3282    6.9953    1.5724 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0164    6.5855    2.8850 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7098    5.5069    3.3655 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4879    5.0248    4.6337 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4529    5.6470    5.4276 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6958    5.1564    6.7540 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.1070    6.6999    4.9131 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.8924    7.1718    3.6773 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5229    8.1689    3.2135 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3876    8.1309    0.9699 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0072    9.3746    1.4391 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0942    8.0196   -0.4890 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9481    7.9221   -1.3827 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0949   -5.6489    5.8649 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6246   -4.9559    6.6151 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6178   -6.6414    5.8914 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0118   -5.8000    3.8894 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6840   -4.5815    2.5664 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6579   -4.2598    4.0288 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4019   -5.9389    3.4804 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8655   -3.3768    3.3962 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7665   -3.0015    4.9124 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3580   -2.5909    5.1798 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9209   -3.8726    6.2837 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1181   -5.6242    4.9013 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3483   -4.5990    3.5634 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3113   -5.3138    4.9932 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3542   -4.9562    6.4402 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1449   -3.4874    6.3527 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6401   -2.5939    6.2109 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7057   -3.0807    3.9077 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4916   -1.6554    4.9105 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2841   -1.1899    4.0883 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1316   -2.6475    3.1123 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9835   -0.2340    2.8269 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6770   -0.7833    1.7490 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9611   -2.8098    1.1162 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3117   -2.2884    2.1661 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6132   -0.2240    0.9203 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2541   -0.7487   -0.2149 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5902   -2.7236   -0.8127 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9258   -2.1920    0.2405 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4688   -1.5321   -1.9642 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2031   -0.0652   -1.0174 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1436    0.4442   -4.0914 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5305   -0.7685   -2.8357 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0905    0.7184   -1.8816 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9091    1.0172   -5.9298 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6800    2.0895   -4.7767 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3488    1.0878   -6.0841 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5616    0.5566   -4.4283 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0550   -1.0717   -6.2359 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4027   -0.9537   -6.8506 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8550   -3.0577   -5.7824 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5330   -2.3058   -4.9094 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9635   -3.2919   -3.3877 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4031   -1.5917   -3.1332 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9051   -3.5124   -4.9420 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2719   -1.8010   -4.8026 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7328   -2.0408   -2.3231 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8199   -2.8243   -3.4483 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5163   -4.1003   -1.4779 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0997   -5.0335   -2.9712 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9959   -5.5368   -0.8571 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6070   -3.5990    0.1882 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9973   -4.4174   -0.1715 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3944   -2.9227   -1.0169 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4990   -5.3239   -2.2176 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6835   -6.6691   -2.1524 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8425   -5.5027   -3.4785 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9578    2.5859   -4.1230 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2670    2.8381   -2.3591 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8942    4.6998   -4.2636 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0011    4.8706   -4.2488 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4647    5.9217   -1.9792 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9124    4.8815   -1.5919 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8809    6.7941   -0.1949 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4282    7.2623    1.5558 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4599    4.9988    2.7497 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0208    4.1731    5.0428 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4729    4.5356    7.0037 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0397    5.4446    7.5340 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4790    8.0655    0.9049 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6537   10.0802    1.2682 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7834    8.8578   -0.7223 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0682    8.7916   -1.8641 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  2  0
 22 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  1  0
 28 29  1  0
 29 30  1  0
 30 31  1  0
 31 32  1  0
 32 33  1  0
 32 34  1  0
 19 35  1  0
 35 36  1  0
 36 37  1  0
 37 38  2  0
 37 39  1  0
 37 40  1  0
 40 41  1  0
 41 42  2  0
 41 43  1  0
 41 44  1  0
 44 45  1  0
 45 46  1  0
 46 47  1  0
 47 48  1  0
 48 49  1  0
 49 50  1  0
 50 51  2  0
 51 52  1  0
 52 53  1  0
 52 54  2  0
 54 55  1  0
 55 56  2  0
 48 57  1  0
 57 58  1  0
 57 59  1  0
 59 60  1  0
 59 46  1  0
 55 49  1  0
  1 61  1  0
  1 62  1  0
  1 63  1  0
  2 64  1  0
  3 65  1  0
  3 66  1  0
  3 67  1  0
  4 68  1  0
  4 69  1  0
  5 70  1  0
  5 71  1  0
  6 72  1  0
  6 73  1  0
  7 74  1  0
  7 75  1  0
  8 76  1  0
  8 77  1  0
  9 78  1  0
  9 79  1  0
 10 80  1  0
 10 81  1  0
 11 82  1  0
 11 83  1  0
 12 84  1  0
 12 85  1  0
 13 86  1  0
 13 87  1  0
 14 88  1  0
 14 89  1  0
 15 90  1  0
 15 91  1  0
 19 92  1  6
 20 93  1  0
 20 94  1  0
 24 95  1  0
 24 96  1  0
 25 97  1  0
 25 98  1  0
 26 99  1  0
 26100  1  0
 27101  1  0
 27102  1  0
 28103  1  0
 28104  1  0
 29105  1  0
 29106  1  0
 30107  1  0
 30108  1  0
 31109  1  0
 31110  1  0
 32111  1  0
 33112  1  0
 33113  1  0
 33114  1  0
 34115  1  0
 34116  1  0
 34117  1  0
 35118  1  0
 35119  1  0
 39120  1  0
 43121  1  0
 45122  1  0
 45123  1  0
 46124  1  1
 48125  1  1
 50126  1  0
 51127  1  0
 53128  1  0
 53129  1  0
 57130  1  0
 58131  1  0
 59132  1  6
 60133  1  0
M  END

CDP-DG(i-12:0/i-16:0)
  Mrv1652309161722312D          

 61 62  0  0  1  0            999 V2000
   17.4451   -4.0157    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.4838   -4.5706    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   15.5226   -4.0157    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.4061   -4.5706    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.5612   -4.5706    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.7337   -5.6806    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.3206   -5.7230    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   19.4768   -4.2072    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   19.4768   -5.3368    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.8027   -4.5411    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.4768   -3.1857    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.8732   -4.1777    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   21.8732   -5.3072    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.1992   -4.5116    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.8732   -3.1563    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   25.1589   -6.7486    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   26.8306   -6.7486    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   27.7371   -5.8702    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   26.0550   -5.2081    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   24.1058   -5.8608    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   26.8357   -7.5484    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   25.1528   -7.5601    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   24.1017   -5.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.4120   -3.3822    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   28.4120   -4.2072    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   27.6975   -2.9697    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   27.6975   -4.6197    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   26.9830   -3.3822    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   26.9830   -4.2072    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   27.6976   -2.1447    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   29.1119   -4.5018    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.8468   -4.1581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.8468   -3.3867    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.1327   -4.5712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.4185   -4.1581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.7044   -4.5712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.9903   -4.1581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2762   -4.5712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5620   -4.1581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8479   -4.5712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1337   -4.1581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4196   -4.5712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7054   -4.1581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7054   -4.9831    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.0193   -6.0931    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.0193   -6.8646    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.3052   -5.6800    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.5910   -6.0931    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.8769   -5.6800    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.1627   -6.0931    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.4486   -5.6800    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7344   -6.0931    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0203   -5.6800    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3062   -6.0931    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5920   -5.6800    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8779   -6.0931    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1637   -5.6800    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4496   -6.0931    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7354   -5.6800    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0213   -6.0931    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0213   -5.2681    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  2  6  1  0  0  0  0
  2  7  1  1  0  0  0
  3  2  1  0  0  0  0
  4  1  1  0  0  0  0
  5  3  1  0  0  0  0
  8  4  1  0  0  0  0
  8  9  1  0  0  0  0
  8 10  1  0  0  0  0
  8 11  2  0  0  0  0
 12 10  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
 12 15  2  0  0  0  0
 14 23  1  0  0  0  0
 16 17  1  0  0  0  0
 16 22  1  1  0  0  0
 18 19  1  0  0  0  0
 18 17  1  0  0  0  0
 18 27  1  1  0  0  0
 19 20  1  0  0  0  0
 20 16  1  0  0  0  0
 20 23  1  1  0  0  0
 21 17  1  0  0  0  0
 24 25  1  0  0  0  0
 24 26  2  0  0  0  0
 25 27  1  0  0  0  0
 25 31  2  0  0  0  0
 26 28  1  0  0  0  0
 26 30  1  0  0  0  0
 27 29  1  0  0  0  0
 28 29  2  0  0  0  0
 32  5  1  0  0  0  0
 32 33  2  0  0  0  0
 32 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 42 44  1  0  0  0  0
 45  6  1  0  0  0  0
 45 46  2  0  0  0  0
 45 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 49 50  1  0  0  0  0
 50 51  1  0  0  0  0
 51 52  1  0  0  0  0
 52 53  1  0  0  0  0
 53 54  1  0  0  0  0
 54 55  1  0  0  0  0
 55 56  1  0  0  0  0
 56 57  1  0  0  0  0
 57 58  1  0  0  0  0
 58 59  1  0  0  0  0
 59 60  1  0  0  0  0
 59 61  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0116161

> <DATABASE_NAME>
hmdb

> <SMILES>
[H][C@@](COC(=O)CCCCCCCCC(C)C)(COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H](C(O)[C@H]1O)N1C=CC(N)=NC1=O)OC(=O)CCCCCCCCCCCCC(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C40H73N3O15P2/c1-30(2)21-17-13-9-7-5-6-8-10-16-20-24-36(45)56-32(27-53-35(44)23-19-15-12-11-14-18-22-31(3)4)28-54-59(49,50)58-60(51,52)55-29-33-37(46)38(47)39(57-33)43-26-25-34(41)42-40(43)48/h25-26,30-33,37-39,46-47H,5-24,27-29H2,1-4H3,(H,49,50)(H,51,52)(H2,41,42,48)/t32-,33-,37+,38?,39-/m1/s1

> <INCHI_KEY>
BRSKYZWRVGMSOT-IBIGLQDYSA-N

> <FORMULA>
C40H73N3O15P2

> <MOLECULAR_WEIGHT>
897.978

> <EXACT_MASS>
897.451692659

> <JCHEM_ACCEPTOR_COUNT>
12

> <JCHEM_ATOM_COUNT>
133

> <JCHEM_AVERAGE_POLARIZABILITY>
96.81503002471004

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
{[(2R,3R,5R)-5-(4-amino-2-oxo-1,2-dihydropyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}({hydroxy[(2R)-2-[(14-methylpentadecanoyl)oxy]-3-[(10-methylundecanoyl)oxy]propoxy]phosphoryl}oxy)phosphinic acid

> <ALOGPS_LOGP>
4.65

> <JCHEM_LOGP>
7.463375981333336

> <ALOGPS_LOGS>
-4.63

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
3.2716255536258676

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.8631673662376511

> <JCHEM_PKA_STRONGEST_BASIC>
-0.03198989821723941

> <JCHEM_POLAR_SURFACE_AREA>
263.27

> <JCHEM_REFRACTIVITY>
221.70170000000007

> <JCHEM_ROTATABLE_BOND_COUNT>
36

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.11e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[(2R,3R,5R)-5-(4-amino-2-oxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy([hydroxy((2R)-2-[(14-methylpentadecanoyl)oxy]-3-[(10-methylundecanoyl)oxy]propoxy)phosphoryl]oxy)phosphinic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0116161
     RDKit          3D
CDP-DG(i-12:0/i-16:0)
133134  0  0  0  0  0  0  0  0999 V2000
    2.9921   -5.5866    5.7834 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6521   -5.0579    4.4176 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9163   -4.9496    3.5794 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0235   -3.6919    4.4386 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7322   -3.6340    5.2139 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3065   -4.5617    4.6467 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5833   -4.5211    5.3972 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3290   -3.2735    5.5698 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8827   -2.5071    4.4405 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8837   -1.9614    3.5038 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5147   -1.1423    2.3829 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4830   -1.9171    1.5471 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0815   -1.0644    0.4530 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0847   -1.8302   -0.3852 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

HEADER    PROTEIN                                 16-SEP-17   NONE
TITLE     NULL                                                        
COMPND    MOLECULE: CDP-DG(i-12:0/i-16:0)                             
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   16-SEP-17         0                                  
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HETATM   43  C   UNK     0      12.517  -7.762   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      12.517  -9.302   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      28.036 -11.374   0.000  0.00  0.00           C+0
HETATM   46  O   UNK     0      28.036 -12.814   0.000  0.00  0.00           O+0
HETATM   47  C   UNK     0      26.703 -10.603   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      25.370 -11.374   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      24.037 -10.603   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      22.704 -11.374   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      21.371 -10.603   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      20.038 -11.374   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      18.705 -10.603   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      17.372 -11.374   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0      16.038 -10.603   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0      14.705 -11.374   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0      13.372 -10.603   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0      12.039 -11.374   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0      10.706 -10.603   0.000  0.00  0.00           C+0
HETATM   60  C   UNK     0       9.373 -11.374   0.000  0.00  0.00           C+0
HETATM   61  C   UNK     0       9.373  -9.834   0.000  0.00  0.00           C+0
CONECT    1    2    4                                                       
CONECT    2    1    6    7    3                                             
CONECT    3    2    5                                                       
CONECT    4    1    8                                                       
CONECT    5    3   32                                                       
CONECT    6    2   45                                                       
CONECT    7    2                                                            
CONECT    8    4    9   10   11                                             
CONECT    9    8                                                            
CONECT   10    8   12                                                       
CONECT   11    8                                                            
CONECT   12   10   13   14   15                                             
CONECT   13   12                                                            
CONECT   14   12   23                                                       
CONECT   15   12                                                            
CONECT   16   17   22   20                                                  
CONECT   17   16   18   21                                                  
CONECT   18   19   17   27                                                  
CONECT   19   18   20                                                       
CONECT   20   19   16   23                                                  
CONECT   21   17                                                            
CONECT   22   16                                                            
CONECT   23   14   20                                                       
CONECT   24   25   26                                                       
CONECT   25   24   27   31                                                  
CONECT   26   24   28   30                                                  
CONECT   27   18   25   29                                                  
CONECT   28   26   29                                                       
CONECT   29   27   28                                                       
CONECT   30   26                                                            
CONECT   31   25                                                            
CONECT   32    5   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40   42                                                       
CONECT   42   41   43   44                                                  
CONECT   43   42                                                            
CONECT   44   42                                                            
CONECT   45    6   46   47                                                  
CONECT   46   45                                                            
CONECT   47   45   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   50                                                       
CONECT   50   49   51                                                       
CONECT   51   50   52                                                       
CONECT   52   51   53                                                       
CONECT   53   52   54                                                       
CONECT   54   53   55                                                       
CONECT   55   54   56                                                       
CONECT   56   55   57                                                       
CONECT   57   56   58                                                       
CONECT   58   57   59                                                       
CONECT   59   58   60   61                                                  
CONECT   60   59                                                            
CONECT   61   59                                                            
MASTER        0    0    0    0    0    0    0    0   61    0  124    0
END

COMPND    HMDB0116161
HETATM    1  C1  UNL     1       2.992  -5.587   5.783  1.00  0.00           C  
HETATM    2  C2  UNL     1       2.652  -5.058   4.418  1.00  0.00           C  
HETATM    3  C3  UNL     1       3.916  -4.950   3.579  1.00  0.00           C  
HETATM    4  C4  UNL     1       2.024  -3.692   4.439  1.00  0.00           C  
HETATM    5  C5  UNL     1       0.732  -3.634   5.214  1.00  0.00           C  
HETATM    6  C6  UNL     1      -0.306  -4.562   4.647  1.00  0.00           C  
HETATM    7  C7  UNL     1      -1.583  -4.521   5.397  1.00  0.00           C  
HETATM    8  C8  UNL     1      -2.329  -3.274   5.570  1.00  0.00           C  
HETATM    9  C9  UNL     1      -2.883  -2.507   4.440  1.00  0.00           C  
HETATM   10  C10 UNL     1      -1.884  -1.961   3.504  1.00  0.00           C  
HETATM   11  C11 UNL     1      -2.515  -1.142   2.383  1.00  0.00           C  
HETATM   12  C12 UNL     1      -3.483  -1.917   1.547  1.00  0.00           C  
HETATM   13  C13 UNL     1      -4.081  -1.064   0.453  1.00  0.00           C  
HETATM   14  C14 UNL     1      -5.085  -1.830  -0.385  1.00  0.00           C  
HETATM   15  C15 UNL     1      -5.676  -0.944  -1.462  1.00  0.00           C  
HETATM   16  C16 UNL     1      -4.690  -0.422  -2.416  1.00  0.00           C  
HETATM   17  O1  UNL     1      -4.731  -0.897  -3.602  1.00  0.00           O  
HETATM   18  O2  UNL     1      -3.734   0.529  -2.139  1.00  0.00           O  
HETATM   19  C17 UNL     1      -2.851   0.961  -3.121  1.00  0.00           C  
HETATM   20  C18 UNL     1      -1.473   0.320  -2.843  1.00  0.00           C  
HETATM   21  O3  UNL     1      -0.604   0.821  -3.849  1.00  0.00           O  
HETATM   22  C19 UNL     1       0.729   0.391  -3.925  1.00  0.00           C  
HETATM   23  O4  UNL     1       1.055  -0.444  -3.069  1.00  0.00           O  
HETATM   24  C20 UNL     1       1.552   0.957  -4.970  1.00  0.00           C  
HETATM   25  C21 UNL     1       2.867   0.392  -5.313  1.00  0.00           C  
HETATM   26  C22 UNL     1       2.974  -0.961  -5.868  1.00  0.00           C  
HETATM   27  C23 UNL     1       2.599  -2.157  -5.109  1.00  0.00           C  
HETATM   28  C24 UNL     1       3.425  -2.443  -3.862  1.00  0.00           C  
HETATM   29  C25 UNL     1       4.860  -2.657  -4.185  1.00  0.00           C  
HETATM   30  C26 UNL     1       5.737  -2.963  -3.043  1.00  0.00           C  
HETATM   31  C27 UNL     1       5.699  -4.202  -2.290  1.00  0.00           C  
HETATM   32  C28 UNL     1       4.512  -4.728  -1.614  1.00  0.00           C  
HETATM   33  C29 UNL     1       3.859  -3.827  -0.603  1.00  0.00           C  
HETATM   34  C30 UNL     1       3.575  -5.594  -2.384  1.00  0.00           C  
HETATM   35  C31 UNL     1      -2.706   2.428  -3.292  1.00  0.00           C  
HETATM   36  O5  UNL     1      -3.854   3.092  -3.623  1.00  0.00           O  
HETATM   37  P1  UNL     1      -3.670   4.735  -3.819  1.00  0.00           P  
HETATM   38  O6  UNL     1      -3.418   5.480  -2.540  1.00  0.00           O  
HETATM   39  O7  UNL     1      -5.152   5.331  -4.438  1.00  0.00           O  
HETATM   40  O8  UNL     1      -2.489   5.158  -4.927  1.00  0.00           O  
HETATM   41  P2  UNL     1      -1.063   5.711  -4.275  1.00  0.00           P  
HETATM   42  O9  UNL     1      -0.472   6.703  -5.287  1.00  0.00           O  
HETATM   43  O10 UNL     1       0.104   4.465  -4.155  1.00  0.00           O  
HETATM   44  O11 UNL     1      -1.238   6.537  -2.837  1.00  0.00           O  
HETATM   45  C32 UNL     1      -0.643   5.923  -1.757  1.00  0.00           C  
HETATM   46  C33 UNL     1      -0.813   6.682  -0.478  1.00  0.00           C  
HETATM   47  O12 UNL     1      -0.198   6.016   0.582  1.00  0.00           O  
HETATM   48  C34 UNL     1      -0.328   6.995   1.572  1.00  0.00           C  
HETATM   49  N1  UNL     1      -0.016   6.585   2.885  1.00  0.00           N  
HETATM   50  C35 UNL     1      -0.710   5.507   3.366  1.00  0.00           C  
HETATM   51  C36 UNL     1      -0.488   5.025   4.634  1.00  0.00           C  
HETATM   52  C37 UNL     1       0.453   5.647   5.428  1.00  0.00           C  
HETATM   53  N2  UNL     1       0.696   5.156   6.754  1.00  0.00           N  
HETATM   54  N3  UNL     1       1.107   6.700   4.913  1.00  0.00           N  
HETATM   55  C38 UNL     1       0.892   7.172   3.677  1.00  0.00           C  
HETATM   56  O13 UNL     1       1.523   8.169   3.213  1.00  0.00           O  
HETATM   57  C39 UNL     1       0.388   8.131   0.970  1.00  0.00           C  
HETATM   58  O14 UNL     1       0.007   9.375   1.439  1.00  0.00           O  
HETATM   59  C40 UNL     1      -0.094   8.020  -0.489  1.00  0.00           C  
HETATM   60  O15 UNL     1       0.948   7.922  -1.383  1.00  0.00           O  
HETATM   61  H1  UNL     1       4.095  -5.649   5.865  1.00  0.00           H  
HETATM   62  H2  UNL     1       2.625  -4.956   6.615  1.00  0.00           H  
HETATM   63  H3  UNL     1       2.618  -6.641   5.891  1.00  0.00           H  
HETATM   64  H4  UNL     1       2.012  -5.800   3.889  1.00  0.00           H  
HETATM   65  H5  UNL     1       3.684  -4.581   2.566  1.00  0.00           H  
HETATM   66  H6  UNL     1       4.658  -4.260   4.029  1.00  0.00           H  
HETATM   67  H7  UNL     1       4.402  -5.939   3.480  1.00  0.00           H  
HETATM   68  H8  UNL     1       1.865  -3.377   3.396  1.00  0.00           H  
HETATM   69  H9  UNL     1       2.766  -3.001   4.912  1.00  0.00           H  
HETATM   70  H10 UNL     1       0.358  -2.591   5.180  1.00  0.00           H  
HETATM   71  H11 UNL     1       0.921  -3.873   6.284  1.00  0.00           H  
HETATM   72  H12 UNL     1       0.118  -5.624   4.901  1.00  0.00           H  
HETATM   73  H13 UNL     1      -0.348  -4.599   3.563  1.00  0.00           H  
HETATM   74  H14 UNL     1      -2.311  -5.314   4.993  1.00  0.00           H  
HETATM   75  H15 UNL     1      -1.354  -4.956   6.440  1.00  0.00           H  
HETATM   76  H16 UNL     1      -3.145  -3.487   6.353  1.00  0.00           H  
HETATM   77  H17 UNL     1      -1.640  -2.594   6.211  1.00  0.00           H  
HETATM   78  H18 UNL     1      -3.706  -3.081   3.908  1.00  0.00           H  
HETATM   79  H19 UNL     1      -3.492  -1.655   4.911  1.00  0.00           H  
HETATM   80  H20 UNL     1      -1.284  -1.190   4.088  1.00  0.00           H  
HETATM   81  H21 UNL     1      -1.132  -2.647   3.112  1.00  0.00           H  
HETATM   82  H22 UNL     1      -2.984  -0.234   2.827  1.00  0.00           H  
HETATM   83  H23 UNL     1      -1.677  -0.783   1.749  1.00  0.00           H  
HETATM   84  H24 UNL     1      -2.961  -2.810   1.116  1.00  0.00           H  
HETATM   85  H25 UNL     1      -4.312  -2.288   2.166  1.00  0.00           H  
HETATM   86  H26 UNL     1      -4.613  -0.224   0.920  1.00  0.00           H  
HETATM   87  H27 UNL     1      -3.254  -0.749  -0.215  1.00  0.00           H  
HETATM   88  H28 UNL     1      -4.590  -2.724  -0.813  1.00  0.00           H  
HETATM   89  H29 UNL     1      -5.926  -2.192   0.240  1.00  0.00           H  
HETATM   90  H30 UNL     1      -6.469  -1.532  -1.964  1.00  0.00           H  
HETATM   91  H31 UNL     1      -6.203  -0.065  -1.017  1.00  0.00           H  
HETATM   92  H32 UNL     1      -3.144   0.444  -4.091  1.00  0.00           H  
HETATM   93  H33 UNL     1      -1.530  -0.768  -2.836  1.00  0.00           H  
HETATM   94  H34 UNL     1      -1.090   0.718  -1.882  1.00  0.00           H  
HETATM   95  H35 UNL     1       0.909   1.017  -5.930  1.00  0.00           H  
HETATM   96  H36 UNL     1       1.680   2.090  -4.777  1.00  0.00           H  
HETATM   97  H37 UNL     1       3.349   1.088  -6.084  1.00  0.00           H  
HETATM   98  H38 UNL     1       3.562   0.557  -4.428  1.00  0.00           H  
HETATM   99  H39 UNL     1       4.055  -1.072  -6.236  1.00  0.00           H  
HETATM  100  H40 UNL     1       2.403  -0.954  -6.851  1.00  0.00           H  
HETATM  101  H41 UNL     1       2.855  -3.058  -5.782  1.00  0.00           H  
HETATM  102  H42 UNL     1       1.533  -2.306  -4.909  1.00  0.00           H  
HETATM  103  H43 UNL     1       2.963  -3.292  -3.388  1.00  0.00           H  
HETATM  104  H44 UNL     1       3.403  -1.592  -3.133  1.00  0.00           H  
HETATM  105  H45 UNL     1       4.905  -3.512  -4.942  1.00  0.00           H  
HETATM  106  H46 UNL     1       5.272  -1.801  -4.803  1.00  0.00           H  
HETATM  107  H47 UNL     1       5.733  -2.041  -2.323  1.00  0.00           H  
HETATM  108  H48 UNL     1       6.820  -2.824  -3.448  1.00  0.00           H  
HETATM  109  H49 UNL     1       6.516  -4.100  -1.478  1.00  0.00           H  
HETATM  110  H50 UNL     1       6.100  -5.033  -2.971  1.00  0.00           H  
HETATM  111  H51 UNL     1       4.996  -5.537  -0.857  1.00  0.00           H  
HETATM  112  H52 UNL     1       4.607  -3.599   0.188  1.00  0.00           H  
HETATM  113  H53 UNL     1       2.997  -4.417  -0.171  1.00  0.00           H  
HETATM  114  H54 UNL     1       3.394  -2.923  -1.017  1.00  0.00           H  
HETATM  115  H55 UNL     1       2.499  -5.324  -2.218  1.00  0.00           H  
HETATM  116  H56 UNL     1       3.684  -6.669  -2.152  1.00  0.00           H  
HETATM  117  H57 UNL     1       3.842  -5.503  -3.478  1.00  0.00           H  
HETATM  118  H58 UNL     1      -1.958   2.586  -4.123  1.00  0.00           H  
HETATM  119  H59 UNL     1      -2.267   2.838  -2.359  1.00  0.00           H  
HETATM  120  H60 UNL     1      -5.894   4.700  -4.264  1.00  0.00           H  
HETATM  121  H61 UNL     1       1.001   4.871  -4.249  1.00  0.00           H  
HETATM  122  H62 UNL     1       0.465   5.922  -1.979  1.00  0.00           H  
HETATM  123  H63 UNL     1      -0.912   4.881  -1.592  1.00  0.00           H  
HETATM  124  H64 UNL     1      -1.881   6.794  -0.195  1.00  0.00           H  
HETATM  125  H65 UNL     1      -1.428   7.262   1.556  1.00  0.00           H  
HETATM  126  H66 UNL     1      -1.460   4.999   2.750  1.00  0.00           H  
HETATM  127  H67 UNL     1      -1.021   4.173   5.043  1.00  0.00           H  
HETATM  128  H68 UNL     1       1.473   4.536   7.004  1.00  0.00           H  
HETATM  129  H69 UNL     1       0.040   5.445   7.534  1.00  0.00           H  
HETATM  130  H70 UNL     1       1.479   8.065   0.905  1.00  0.00           H  
HETATM  131  H71 UNL     1       0.654  10.080   1.268  1.00  0.00           H  
HETATM  132  H72 UNL     1      -0.783   8.858  -0.722  1.00  0.00           H  
HETATM  133  H73 UNL     1       1.068   8.792  -1.864  1.00  0.00           H  
CONECT    1    2   61   62   63
CONECT    2    3    4   64
CONECT    3   65   66   67
CONECT    4    5   68   69
CONECT    5    6   70   71
CONECT    6    7   72   73
CONECT    7    8   74   75
CONECT    8    9   76   77
CONECT    9   10   78   79
CONECT   10   11   80   81
CONECT   11   12   82   83
CONECT   12   13   84   85
CONECT   13   14   86   87
CONECT   14   15   88   89
CONECT   15   16   90   91
CONECT   16   17   17   18
CONECT   18   19
CONECT   19   20   35   92
CONECT   20   21   93   94
CONECT   21   22
CONECT   22   23   23   24
CONECT   24   25   95   96
CONECT   25   26   97   98
CONECT   26   27   99  100
CONECT   27   28  101  102
CONECT   28   29  103  104
CONECT   29   30  105  106
CONECT   30   31  107  108
CONECT   31   32  109  110
CONECT   32   33   34  111
CONECT   33  112  113  114
CONECT   34  115  116  117
CONECT   35   36  118  119
CONECT   36   37
CONECT   37   38   38   39   40
CONECT   39  120
CONECT   40   41
CONECT   41   42   42   43   44
CONECT   43  121
CONECT   44   45
CONECT   45   46  122  123
CONECT   46   47   59  124
CONECT   47   48
CONECT   48   49   57  125
CONECT   49   50   55
CONECT   50   51   51  126
CONECT   51   52  127
CONECT   52   53   54   54
CONECT   53  128  129
CONECT   54   55
CONECT   55   56   56
CONECT   57   58   59  130
CONECT   58  131
CONECT   59   60  132
CONECT   60  133
END

HMDB0116161
     RDKit          3D
CDP-DG(i-12:0/i-16:0)
133134  0  0  0  0  0  0  0  0999 V2000
    2.9921   -5.5866    5.7834 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6521   -5.0579    4.4176 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9163   -4.9496    3.5794 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0235   -3.6919    4.4386 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7322   -3.6340    5.2139 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3065   -4.5617    4.6467 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5833   -4.5211    5.3972 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3290   -3.2735    5.5698 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8827   -2.5071    4.4405 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8837   -1.9614    3.5038 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5147   -1.1423    2.3829 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4830   -1.9171    1.5471 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0815   -1.0644    0.4530 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
1-Isododecanoyl-2-isohexadecanoyl-sn-glycero-3-CDP	HMDB
1-Isododecanoyl-2-isohexadecanoyl-sn-glycero-3-cytidine-5'-diphosphate	HMDB
CDP-DG(28:0)	HMDB
CDP-Diacylglycerol(I-12:0/I-16:0)	HMDB
CDP-Diacylglycerol(28:0)	HMDB
{[(2R,3R,5R)-3,4-dihydroxy-5-(2-hydroxy-4-imino-1,4-dihydropyrimidin-1-yl)oxolan-2-yl]methoxy}({hydroxy[(2R)-2-[(14-methylpentadecanoyl)oxy]-3-[(10-methylundecanoyl)oxy]propoxy]phosphoryl}oxy)phosphinate	HMDB
CDP-DG(i-12:0/i-16:0)	SMPDB

Chemical Formula

C₄₀H₇₃N₃O₁₅P₂

Average Molecular Weight

897.978

Monoisotopic Molecular Weight

897.451692659

IUPAC Name

{[(2R,3R,5R)-5-(4-amino-2-oxo-1,2-dihydropyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}({hydroxy[(2R)-2-[(14-methylpentadecanoyl)oxy]-3-[(10-methylundecanoyl)oxy]propoxy]phosphoryl}oxy)phosphinic acid

Traditional Name

[(2R,3R,5R)-5-(4-amino-2-oxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy([hydroxy((2R)-2-[(14-methylpentadecanoyl)oxy]-3-[(10-methylundecanoyl)oxy]propoxy)phosphoryl]oxy)phosphinic acid

CAS Registry Number

Not Available

SMILES

[H][C@@](COC(=O)CCCCCCCCC(C)C)(COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H](C(O)[C@H]1O)N1C=CC(N)=NC1=O)OC(=O)CCCCCCCCCCCCC(C)C

InChI Identifier

InChI=1S/C40H73N3O15P2/c1-30(2)21-17-13-9-7-5-6-8-10-16-20-24-36(45)56-32(27-53-35(44)23-19-15-12-11-14-18-22-31(3)4)28-54-59(49,50)58-60(51,52)55-29-33-37(46)38(47)39(57-33)43-26-25-34(41)42-40(43)48/h25-26,30-33,37-39,46-47H,5-24,27-29H2,1-4H3,(H,49,50)(H,51,52)(H2,41,42,48)/t32-,33-,37+,38?,39-/m1/s1

InChI Key

BRSKYZWRVGMSOT-IBIGLQDYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cdp-diacylglycerols. These are glycerolipids containing a diacylglycerol, with a cytidine diphosphate attached to the oxygen O1 or O2 of the glycerol part.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Glycerophospholipids

Sub Class

CDP-glycerols

Direct Parent

CDP-diacylglycerols

Alternative Parents

Substituents

Cdp-diacylglycerol
Pyrimidine ribonucleoside diphosphate
Diacyl-glycerol-3-pyrophosphate
Pentose phosphate
Pentose-5-phosphate
Glycosyl compound
N-glycosyl compound
Monosaccharide phosphate
Organic pyrophosphate
Fatty acid ester
Monoalkyl phosphate
Hydroxypyrimidine
Dicarboxylic acid or derivatives
Fatty acyl
Alkyl phosphate
Hydropyrimidine
Pyrimidine
Phosphoric acid ester
Monosaccharide
Organic phosphoric acid derivative
Heteroaromatic compound
Tetrahydrofuran
Carboxylic acid ester
1,2-diol
Secondary alcohol
Oxacycle
Organoheterocyclic compound
Azacycle
Carboxylic acid derivative
Organopnictogen compound
Organic oxide
Alcohol
Organic nitrogen compound
Hydrocarbon derivative
Carbonyl group
Organic oxygen compound
Organooxygen compound
Organonitrogen compound
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Ontology

Not Available

Physical Properties

State

Solid

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	4.65	ALOGPS
logP	7.46	ChemAxon
logS	-4.6	ALOGPS
pKa (Strongest Acidic)	1.86	ChemAxon
pKa (Strongest Basic)	-0.032	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	12	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	263.27 Å²	ChemAxon
Rotatable Bond Count	36	ChemAxon
Refractivity	221.7 m³·mol⁻¹	ChemAxon
Polarizability	96.82 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M+H]+	265.96	30932474
DeepCCS	[M-H]-	264.135	30932474
DeepCCS	[M-2H]-	297.789	30932474
DeepCCS	[M+Na]+	271.566	30932474
AllCCS	[M+H]+	288.6	32859911
AllCCS	[M+H-H2O]+	288.9	32859911
AllCCS	[M+NH4]+	288.2	32859911
AllCCS	[M+Na]+	288.1	32859911
AllCCS	[M-H]-	282.8	32859911
AllCCS	[M+Na-2H]-	289.3	32859911
AllCCS	[M+HCOO]-	296.3	32859911

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.	9.8 minutes	32390414
Predicted by Siyang on May 30, 2022	19.1661 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	3.07 minutes	32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	3688.0 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	126.0 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	285.7 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	171.2 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	566.3 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	1083.5 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	1108.1 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	222.1 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	1802.5 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	964.2 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	1937.8 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	685.7 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	563.6 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	118.6 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	110.8 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	12.9 seconds	40023050

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
CDP-DG(i-12:0/i-16:0)	[H][C@@](COC(=O)CCCCCCCCC(C)C)(COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H](C(O)[C@H]1O)N1C=CC(N)=NC1=O)OC(=O)CCCCCCCCCCCCC(C)C	5657.7	Standard polar	33892256
CDP-DG(i-12:0/i-16:0)	[H][C@@](COC(=O)CCCCCCCCC(C)C)(COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H](C(O)[C@H]1O)N1C=CC(N)=NC1=O)OC(=O)CCCCCCCCCCCCC(C)C	5286.4	Standard non polar	33892256
CDP-DG(i-12:0/i-16:0)	[H][C@@](COC(=O)CCCCCCCCC(C)C)(COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H](C(O)[C@H]1O)N1C=CC(N)=NC1=O)OC(=O)CCCCCCCCCCCCC(C)C	6208.9	Semi standard non polar	33892256

Spectra

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Name	SMPDB/PathBank	KEGG
Cardiolipin Biosynthesis CL(a-13:0/18:2(9Z,11Z)/i-12:0/i-16:0)		Not Available
Cardiolipin Biosynthesis CL(a-13:0/a-13:0/i-12:0/i-16:0)		Not Available
Cardiolipin Biosynthesis CL(a-13:0/a-15:0/i-12:0/i-16:0)		Not Available
Cardiolipin Biosynthesis CL(a-13:0/a-17:0/i-12:0/i-16:0)		Not Available
Cardiolipin Biosynthesis CL(a-13:0/a-21:0/i-12:0/i-16:0)		Not Available