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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-10 21:20:29 UTC
Update Date2021-09-26 22:51:43 UTC
HMDB IDHMDB0244157
Secondary Accession NumbersNone
Metabolite Identification
Common Name1,3-Benzodioxole-5,6-diamine
Description1,3-Benzodioxole-5,6-diamine, also known as 1,2-DMB or DMB CPD, belongs to the class of organic compounds known as benzodioxoles. These are organic compounds containing a benzene ring fused to either isomers of dioxole. Dioxole is a five-membered unsaturated ring of two oxygen atoms and three carbon atoms. Based on a literature review very few articles have been published on 1,3-Benzodioxole-5,6-diamine. This compound has been identified in human blood as reported by (PMID: 31557052 ). 1,3-benzodioxole-5,6-diamine is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically 1,3-Benzodioxole-5,6-diamine is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
1,2-DMBHMDB
1,2-Diamino-4,5-methylenedioxy-benzeneHMDB
1,2-Diamino-4,5-methylenedioxybenzeneHMDB
DMB CPDHMDB
Chemical FormulaC7H8N2O2
Average Molecular Weight152.153
Monoisotopic Molecular Weight152.058577506
IUPAC Name2H-1,3-benzodioxole-5,6-diamine
Traditional Name2H-1,3-benzodioxole-5,6-diamine
CAS Registry NumberNot Available
SMILES
NC1=CC2=C(OCO2)C=C1N
InChI Identifier
InChI=1S/C7H8N2O2/c8-4-1-6-7(2-5(4)9)11-3-10-6/h1-2H,3,8-9H2
InChI KeySNHKEQOYVVRBQO-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as benzodioxoles. These are organic compounds containing a benzene ring fused to either isomers of dioxole. Dioxole is a five-membered unsaturated ring of two oxygen atoms and three carbon atoms.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassBenzodioxoles
Sub ClassNot Available
Direct ParentBenzodioxoles
Alternative Parents
Substituents
  • Benzodioxole
  • Benzenoid
  • Primary aromatic amine
  • Oxacycle
  • Acetal
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Hydrocarbon derivative
  • Primary amine
  • Organooxygen compound
  • Organonitrogen compound
  • Amine
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP0.04ALOGPS
logP-0.061ChemAxon
logS-0.18ALOGPS
pKa (Strongest Basic)4.35ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area70.5 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity41.23 m³·mol⁻¹ChemAxon
Polarizability14.89 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+130.27230932474
DeepCCS[M-H]-127.7330932474
DeepCCS[M-2H]-163.75930932474
DeepCCS[M+Na]+138.69530932474
AllCCS[M+H]+132.932859911
AllCCS[M+H-H2O]+128.332859911
AllCCS[M+NH4]+137.332859911
AllCCS[M+Na]+138.532859911
AllCCS[M-H]-128.632859911
AllCCS[M+Na-2H]-129.632859911
AllCCS[M+HCOO]-130.732859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022.1.77 minutes32390414
Predicted by Siyang on May 30, 202210.4033 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20222.91 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid1207.0 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid334.9 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid89.2 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid200.8 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid60.2 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid261.6 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid330.7 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)219.6 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid793.6 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid82.1 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid966.3 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid245.6 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid286.8 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate485.1 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA335.8 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water159.1 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
1,3-Benzodioxole-5,6-diamineNC1=CC2=C(OCO2)C=C1N2347.5Standard polar33892256
1,3-Benzodioxole-5,6-diamineNC1=CC2=C(OCO2)C=C1N1533.1Standard non polar33892256
1,3-Benzodioxole-5,6-diamineNC1=CC2=C(OCO2)C=C1N1623.8Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
1,3-Benzodioxole-5,6-diamine,1TMS,isomer #1C[Si](C)(C)NC1=CC2=C(C=C1N)OCO21716.5Semi standard non polar33892256
1,3-Benzodioxole-5,6-diamine,1TMS,isomer #1C[Si](C)(C)NC1=CC2=C(C=C1N)OCO21625.6Standard non polar33892256
1,3-Benzodioxole-5,6-diamine,1TMS,isomer #1C[Si](C)(C)NC1=CC2=C(C=C1N)OCO22772.5Standard polar33892256
1,3-Benzodioxole-5,6-diamine,2TMS,isomer #1C[Si](C)(C)NC1=CC2=C(C=C1N[Si](C)(C)C)OCO21840.0Semi standard non polar33892256
1,3-Benzodioxole-5,6-diamine,2TMS,isomer #1C[Si](C)(C)NC1=CC2=C(C=C1N[Si](C)(C)C)OCO21799.7Standard non polar33892256
1,3-Benzodioxole-5,6-diamine,2TMS,isomer #1C[Si](C)(C)NC1=CC2=C(C=C1N[Si](C)(C)C)OCO22483.3Standard polar33892256
1,3-Benzodioxole-5,6-diamine,2TMS,isomer #2C[Si](C)(C)N(C1=CC2=C(C=C1N)OCO2)[Si](C)(C)C1818.0Semi standard non polar33892256
1,3-Benzodioxole-5,6-diamine,2TMS,isomer #2C[Si](C)(C)N(C1=CC2=C(C=C1N)OCO2)[Si](C)(C)C1861.8Standard non polar33892256
1,3-Benzodioxole-5,6-diamine,2TMS,isomer #2C[Si](C)(C)N(C1=CC2=C(C=C1N)OCO2)[Si](C)(C)C2500.4Standard polar33892256
1,3-Benzodioxole-5,6-diamine,3TMS,isomer #1C[Si](C)(C)NC1=CC2=C(C=C1N([Si](C)(C)C)[Si](C)(C)C)OCO21936.8Semi standard non polar33892256
1,3-Benzodioxole-5,6-diamine,3TMS,isomer #1C[Si](C)(C)NC1=CC2=C(C=C1N([Si](C)(C)C)[Si](C)(C)C)OCO21994.2Standard non polar33892256
1,3-Benzodioxole-5,6-diamine,3TMS,isomer #1C[Si](C)(C)NC1=CC2=C(C=C1N([Si](C)(C)C)[Si](C)(C)C)OCO22294.6Standard polar33892256
1,3-Benzodioxole-5,6-diamine,4TMS,isomer #1C[Si](C)(C)N(C1=CC2=C(C=C1N([Si](C)(C)C)[Si](C)(C)C)OCO2)[Si](C)(C)C1993.0Semi standard non polar33892256
1,3-Benzodioxole-5,6-diamine,4TMS,isomer #1C[Si](C)(C)N(C1=CC2=C(C=C1N([Si](C)(C)C)[Si](C)(C)C)OCO2)[Si](C)(C)C2130.7Standard non polar33892256
1,3-Benzodioxole-5,6-diamine,4TMS,isomer #1C[Si](C)(C)N(C1=CC2=C(C=C1N([Si](C)(C)C)[Si](C)(C)C)OCO2)[Si](C)(C)C2171.5Standard polar33892256
1,3-Benzodioxole-5,6-diamine,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)NC1=CC2=C(C=C1N)OCO21948.0Semi standard non polar33892256
1,3-Benzodioxole-5,6-diamine,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)NC1=CC2=C(C=C1N)OCO21849.5Standard non polar33892256
1,3-Benzodioxole-5,6-diamine,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)NC1=CC2=C(C=C1N)OCO22891.3Standard polar33892256
1,3-Benzodioxole-5,6-diamine,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)NC1=CC2=C(C=C1N[Si](C)(C)C(C)(C)C)OCO22302.0Semi standard non polar33892256
1,3-Benzodioxole-5,6-diamine,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)NC1=CC2=C(C=C1N[Si](C)(C)C(C)(C)C)OCO22267.5Standard non polar33892256
1,3-Benzodioxole-5,6-diamine,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)NC1=CC2=C(C=C1N[Si](C)(C)C(C)(C)C)OCO22620.6Standard polar33892256
1,3-Benzodioxole-5,6-diamine,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)N(C1=CC2=C(C=C1N)OCO2)[Si](C)(C)C(C)(C)C2247.3Semi standard non polar33892256
1,3-Benzodioxole-5,6-diamine,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)N(C1=CC2=C(C=C1N)OCO2)[Si](C)(C)C(C)(C)C2286.8Standard non polar33892256
1,3-Benzodioxole-5,6-diamine,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)N(C1=CC2=C(C=C1N)OCO2)[Si](C)(C)C(C)(C)C2595.1Standard polar33892256
1,3-Benzodioxole-5,6-diamine,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)NC1=CC2=C(C=C1N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)OCO22559.1Semi standard non polar33892256
1,3-Benzodioxole-5,6-diamine,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)NC1=CC2=C(C=C1N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)OCO22648.8Standard non polar33892256
1,3-Benzodioxole-5,6-diamine,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)NC1=CC2=C(C=C1N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)OCO22581.6Standard polar33892256
1,3-Benzodioxole-5,6-diamine,4TBDMS,isomer #1CC(C)(C)[Si](C)(C)N(C1=CC2=C(C=C1N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)OCO2)[Si](C)(C)C(C)(C)C2760.2Semi standard non polar33892256
1,3-Benzodioxole-5,6-diamine,4TBDMS,isomer #1CC(C)(C)[Si](C)(C)N(C1=CC2=C(C=C1N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)OCO2)[Si](C)(C)C(C)(C)C2938.1Standard non polar33892256
1,3-Benzodioxole-5,6-diamine,4TBDMS,isomer #1CC(C)(C)[Si](C)(C)N(C1=CC2=C(C=C1N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)OCO2)[Si](C)(C)C(C)(C)C2582.8Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 1,3-Benzodioxole-5,6-diamine GC-MS (Non-derivatized) - 70eV, Positivesplash10-0udi-1900000000-73dbf62b4f2639021b342021-09-24Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1,3-Benzodioxole-5,6-diamine GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1,3-Benzodioxole-5,6-diamine 10V, Positive-QTOFsplash10-0udi-0900000000-c8ca0fe9d3167020bf3f2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1,3-Benzodioxole-5,6-diamine 20V, Positive-QTOFsplash10-0udi-0900000000-53a293949e27d6aaf7a52021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1,3-Benzodioxole-5,6-diamine 40V, Positive-QTOFsplash10-0a4j-9600000000-54e3d16e6ac88afe89192021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1,3-Benzodioxole-5,6-diamine 10V, Negative-QTOFsplash10-0udi-0900000000-afd98243b107283789932021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1,3-Benzodioxole-5,6-diamine 20V, Negative-QTOFsplash10-0udi-0900000000-afd98243b107283789932021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1,3-Benzodioxole-5,6-diamine 40V, Negative-QTOFsplash10-00xu-7900000000-9802c866db899323c8912021-10-12Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID2338520
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound3080788
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]