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Showing metabocard for S-Nitrosomercaptoethanol (HMDB0257419)

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IdentificationTaxonomyOntologyPhysical propertiesSpectraBiological propertiesConcentrationsLinksReferencesXML
Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 18:22:55 UTC
Update Date2021-09-26 23:13:46 UTC
HMDB IDHMDB0257419
Secondary Accession NumbersNone
Metabolite Identification
Common NameS-Nitrosomercaptoethanol
DescriptionS-Nitrosomercaptoethanol belongs to the class of organic compounds known as nitrosothiols. These are nitroso compounds containing the nitrosothiol group, with the general formula RS=N=O. Based on a literature review very few articles have been published on S-Nitrosomercaptoethanol. This compound has been identified in human blood as reported by (PMID: 31557052 ). S-nitrosomercaptoethanol is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically S-Nitrosomercaptoethanol is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
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MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0257419 (S-Nitrosomercaptoethanol)


  Mrv1652309112120232D          

  6  5  0  0  0  0            999 V2000
    0.5230    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9520    1.1270    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    2.6664    0.7145    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.3809    1.1270    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1914    0.7145    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  1  6  1  0  0  0  0
M  END
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3D MOL for HMDB0257419 (S-Nitrosomercaptoethanol)

HMDB0257419
     RDKit          3D
S-Nitrosomercaptoethanol
 11 10  0  0  0  0  0  0  0  0999 V2000
    3.2208   -0.5050    0.2764 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9916    0.6621    0.0977 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.3482    1.2841    0.0756 S   0  0  0  0  0  0  0  0  0  0  0  0
    0.2198   -0.1143    0.2802 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2248    0.3074    0.3131 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9420   -0.6994    0.9422 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3560   -0.8000   -0.5927 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4502   -0.6340    1.2344 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5365    0.4811   -0.7275 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4013    1.2365    0.8808 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4821   -1.2185    0.2985 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  4  7  1  0
  4  8  1  0
  5  9  1  0
  5 10  1  0
  6 11  1  0
M  END
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3D SDF for HMDB0257419 (S-Nitrosomercaptoethanol)


  Mrv1652309112120232D          

  6  5  0  0  0  0            999 V2000
    0.5230    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9520    1.1270    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    2.6664    0.7145    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.3809    1.1270    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1914    0.7145    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  1  6  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0257419

> <DATABASE_NAME>
hmdb

> <SMILES>
OCCSN=O

> <INCHI_IDENTIFIER>
InChI=1S/C2H5NO2S/c4-1-2-6-3-5/h4H,1-2H2

> <INCHI_KEY>
AVGNNQMFRRYDBY-UHFFFAOYSA-N

> <FORMULA>
C2H5NO2S

> <MOLECULAR_WEIGHT>
107.13

> <EXACT_MASS>
107.004099579

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
11

> <JCHEM_AVERAGE_POLARIZABILITY>
9.71091096381349

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-(nitrososulfanyl)ethan-1-ol

> <ALOGPS_LOGP>
-0.34

> <JCHEM_LOGP>
0.12023896533333328

> <ALOGPS_LOGS>
-0.31

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
15.209274622860793

> <JCHEM_PKA_STRONGEST_BASIC>
-2.214483544987818

> <JCHEM_POLAR_SURFACE_AREA>
49.66

> <JCHEM_REFRACTIVITY>
26.105599999999995

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
5.22e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-(nitrososulfanyl)ethanol

> <JCHEM_VEBER_RULE>
0

$$$$
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3D-SDF for HMDB0257419 (S-Nitrosomercaptoethanol)

HMDB0257419
     RDKit          3D
S-Nitrosomercaptoethanol
 11 10  0  0  0  0  0  0  0  0999 V2000
    3.2208   -0.5050    0.2764 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9916    0.6621    0.0977 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.3482    1.2841    0.0756 S   0  0  0  0  0  0  0  0  0  0  0  0
    0.2198   -0.1143    0.2802 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2248    0.3074    0.3131 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9420   -0.6994    0.9422 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3560   -0.8000   -0.5927 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4502   -0.6340    1.2344 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5365    0.4811   -0.7275 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4013    1.2365    0.8808 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4821   -1.2185    0.2985 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  4  7  1  0
  4  8  1  0
  5  9  1  0
  5 10  1  0
  6 11  1  0
M  END
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PDB for HMDB0257419 (S-Nitrosomercaptoethanol)

HEADER    PROTEIN                                 11-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-21         0                                  
HETATM    1  C   UNK     0       0.976   2.104   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.310   1.334   0.000  0.00  0.00           C+0
HETATM    3  S   UNK     0       3.644   2.104   0.000  0.00  0.00           S+0
HETATM    4  N   UNK     0       4.977   1.334   0.000  0.00  0.00           N+0
HETATM    5  O   UNK     0       6.311   2.104   0.000  0.00  0.00           O+0
HETATM    6  O   UNK     0      -0.357   1.334   0.000  0.00  0.00           O+0
CONECT    1    2    6                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4                                                            
CONECT    6    1                                                            
MASTER        0    0    0    0    0    0    0    0    6    0   10    0
END
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3D PDB for HMDB0257419 (S-Nitrosomercaptoethanol)

COMPND    HMDB0257419
HETATM    1  O1  UNL     1       3.221  -0.505   0.276  1.00  0.00           O  
HETATM    2  N1  UNL     1       2.992   0.662   0.098  1.00  0.00           N  
HETATM    3  S1  UNL     1       1.348   1.284   0.076  1.00  0.00           S  
HETATM    4  C1  UNL     1       0.220  -0.114   0.280  1.00  0.00           C  
HETATM    5  C2  UNL     1      -1.225   0.307   0.313  1.00  0.00           C  
HETATM    6  O2  UNL     1      -1.942  -0.699   0.942  1.00  0.00           O  
HETATM    7  H1  UNL     1       0.356  -0.800  -0.593  1.00  0.00           H  
HETATM    8  H2  UNL     1       0.450  -0.634   1.234  1.00  0.00           H  
HETATM    9  H3  UNL     1      -1.536   0.481  -0.727  1.00  0.00           H  
HETATM   10  H4  UNL     1      -1.401   1.236   0.881  1.00  0.00           H  
HETATM   11  H5  UNL     1      -2.482  -1.219   0.299  1.00  0.00           H  
CONECT    1    2    2
CONECT    2    3
CONECT    3    4
CONECT    4    5    7    8
CONECT    5    6    9   10
CONECT    6   11
END
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SMILES for HMDB0257419 (S-Nitrosomercaptoethanol)

OCCSN=O
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INCHI for HMDB0257419 (S-Nitrosomercaptoethanol)

InChI=1S/C2H5NO2S/c4-1-2-6-3-5/h4H,1-2H2
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View in JSmolView NMR AssignmentsView Stereo Labels
Synonyms
ValueSource
2-(Nitrososulphanyl)ethan-1-olHMDB
Chemical FormulaC2H5NO2S
Average Molecular Weight107.13
Monoisotopic Molecular Weight107.004099579
IUPAC Name2-(nitrososulfanyl)ethan-1-ol
Traditional Name2-(nitrososulfanyl)ethanol
CAS Registry NumberNot Available
SMILES
OCCSN=O
InChI Identifier
InChI=1S/C2H5NO2S/c4-1-2-6-3-5/h4H,1-2H2
InChI KeyAVGNNQMFRRYDBY-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as nitrosothiols. These are nitroso compounds containing the nitrosothiol group, with the general formula RS=N=O.
KingdomOrganic compounds
Super ClassOrganic nitrogen compounds
ClassOrganonitrogen compounds
Sub ClassOrganic nitroso compounds
Direct ParentNitrosothiols
Alternative Parents
Substituents
  • Nitrosothiol-group
  • Nitrosothiol
  • Sulfenyl compound
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Primary alcohol
  • Organosulfur compound
  • Organooxygen compound
  • Alcohol
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Biological locationSource
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP-0.34ALOGPS
logP0.12ChemAxon
logS-0.31ALOGPS
pKa (Strongest Acidic)15.21ChemAxon
pKa (Strongest Basic)-2.2ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area49.66 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity26.11 m³·mol⁻¹ChemAxon
Polarizability9.71 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+123.38130932474
DeepCCS[M-H]-121.52430932474
DeepCCS[M-2H]-156.87530932474
DeepCCS[M+Na]+130.83330932474
AllCCS[M+H]+124.932859911
AllCCS[M+H-H2O]+120.732859911
AllCCS[M+NH4]+128.932859911
AllCCS[M+Na]+130.032859911
AllCCS[M-H]-132.532859911
AllCCS[M+Na-2H]-137.132859911
AllCCS[M+HCOO]-142.232859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.2.38 minutes32390414
Predicted by Siyang on May 30, 20228.294 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20221.89 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid803.5 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid346.6 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid88.9 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid242.8 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid66.0 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid253.5 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid275.1 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)467.2 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid580.0 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid59.1 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid832.0 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid220.8 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid262.8 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate606.9 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA280.2 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water242.5 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
S-NitrosomercaptoethanolOCCSN=O1792.8Standard polar33892256
S-NitrosomercaptoethanolOCCSN=O983.1Standard non polar33892256
S-NitrosomercaptoethanolOCCSN=O1063.4Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - S-Nitrosomercaptoethanol GC-MS (Non-derivatized) - 70eV, Positivesplash10-01td-9000000000-608cc6892220226808802021-09-24Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - S-Nitrosomercaptoethanol GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - S-Nitrosomercaptoethanol GC-MS (TMS_1_1) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - S-Nitrosomercaptoethanol GC-MS (TBDMS_1_1) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID97131
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound108022
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]