| Record Information |
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| Version | 5.0 |
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| Status | Predicted |
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| Creation Date | 2021-09-18 01:26:10 UTC |
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| Update Date | 2022-11-30 20:09:02 UTC |
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| HMDB ID | HMDB0294455 |
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| Secondary Accession Numbers | None |
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| Metabolite Identification |
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| Common Name | DG(10:0/0:0/PGE2) |
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| Description | DG(10:0/0:0/PGE2) belongs to the class of organic compounds known as prostaglandins and related compounds. These are unsaturated carboxylic acids consisting of a 20 carbon skeleton that also contains a five member ring, and are based upon the fatty acid arachidonic acid. Based on a literature review very few articles have been published on DG(10:0/0:0/PGE2). |
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| Structure | CCCCCCCCCC(=O)OC[C@@H](O)COC(=O)CCC\C=C/C[C@@H]1[C@@H](\C=C\[C@@H](O)CCCCC)[C@H](O)CC1=O InChI=1S/C33H56O8/c1-3-5-7-8-9-10-15-19-32(38)40-24-27(35)25-41-33(39)20-16-12-11-14-18-28-29(31(37)23-30(28)36)22-21-26(34)17-13-6-4-2/h11,14,21-22,26-29,31,34-35,37H,3-10,12-13,15-20,23-25H2,1-2H3/b14-11-,22-21+/t26-,27+,28+,29+,31+/m0/s1 |
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| Synonyms | | Value | Source |
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| (2R)-2-Hydroxy-3-{[(5Z)-7-[(1R,2R,3R)-3-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-5-oxocyclopentyl]hept-5-enoyl]oxy}propyl decanoic acid | HMDB |
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| Chemical Formula | C33H56O8 |
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| Average Molecular Weight | 580.803 |
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| Monoisotopic Molecular Weight | 580.397518763 |
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| IUPAC Name | (2R)-2-hydroxy-3-{[(5Z)-7-[(1R,2R,3R)-3-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-5-oxocyclopentyl]hept-5-enoyl]oxy}propyl decanoate |
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| Traditional Name | (2R)-2-hydroxy-3-{[(5Z)-7-[(1R,2R,3R)-3-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-5-oxocyclopentyl]hept-5-enoyl]oxy}propyl decanoate |
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| CAS Registry Number | Not Available |
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| SMILES | CCCCCCCCCC(=O)OC[C@@H](O)COC(=O)CCC\C=C/C[C@@H]1[C@@H](\C=C\[C@@H](O)CCCCC)[C@H](O)CC1=O |
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| InChI Identifier | InChI=1S/C33H56O8/c1-3-5-7-8-9-10-15-19-32(38)40-24-27(35)25-41-33(39)20-16-12-11-14-18-28-29(31(37)23-30(28)36)22-21-26(34)17-13-6-4-2/h11,14,21-22,26-29,31,34-35,37H,3-10,12-13,15-20,23-25H2,1-2H3/b14-11-,22-21+/t26-,27+,28+,29+,31+/m0/s1 |
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| InChI Key | AUPIWILYVULSBP-BAZCXONHSA-N |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as prostaglandins and related compounds. These are unsaturated carboxylic acids consisting of a 20 carbon skeleton that also contains a five member ring, and are based upon the fatty acid arachidonic acid. |
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| Kingdom | Organic compounds |
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| Super Class | Lipids and lipid-like molecules |
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| Class | Fatty Acyls |
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| Sub Class | Eicosanoids |
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| Direct Parent | Prostaglandins and related compounds |
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| Alternative Parents | |
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| Substituents | - Prostaglandin skeleton
- Diradylglycerol
- Diacylglycerol
- 1,3-acyl-sn-glycerol
- Fatty alcohol
- Glycerolipid
- Fatty acid ester
- Dicarboxylic acid or derivatives
- Cyclopentanol
- Cyclic alcohol
- Cyclic ketone
- Secondary alcohol
- Ketone
- Carboxylic acid ester
- Carboxylic acid derivative
- Organic oxygen compound
- Organic oxide
- Hydrocarbon derivative
- Organooxygen compound
- Carbonyl group
- Alcohol
- Aliphatic homomonocyclic compound
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| Molecular Framework | Aliphatic homomonocyclic compounds |
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| External Descriptors | Not Available |
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| Ontology |
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| Physiological effect | Not Available |
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| Disposition | |
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| Process | Not Available |
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| Role | Not Available |
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| Physical Properties |
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| State | Not Available |
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| Experimental Molecular Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Experimental Chromatographic Properties | Not Available |
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| Predicted Molecular Properties | |
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| Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Retention Times Underivatized| Chromatographic Method | Retention Time | Reference |
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| Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022. | 8.58 minutes | 32390414 | | Predicted by Siyang on May 30, 2022 | 20.3773 minutes | 33406817 | | Predicted by Siyang using ReTip algorithm on June 8, 2022 | 0.84 minutes | 32390414 | | Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid | 4161.9 seconds | 40023050 | | Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid | 210.5 seconds | 40023050 | | Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid | 271.0 seconds | 40023050 | | Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid | 187.3 seconds | 40023050 | | RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 553.5 seconds | 40023050 | | Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid | 1001.0 seconds | 40023050 | | BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid | 815.1 seconds | 40023050 | | HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate) | 171.3 seconds | 40023050 | | UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid | 2054.8 seconds | 40023050 | | BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid | 802.3 seconds | 40023050 | | UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid | 2206.6 seconds | 40023050 | | SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 607.1 seconds | 40023050 | | RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 563.1 seconds | 40023050 | | MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate | 190.8 seconds | 40023050 | | KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA | 247.5 seconds | 40023050 | | Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water | 8.5 seconds | 40023050 |
Predicted Kovats Retention IndicesDerivatized| Derivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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| DG(10:0/0:0/PGE2),4TMS,isomer #1 | CCCCCCCCCC(=O)OC[C@H](COC(=O)CCC/C=C\CC1=C(O[Si](C)(C)C)C[C@@H](O[Si](C)(C)C)[C@@H]1/C=C/[C@H](CCCCC)O[Si](C)(C)C)O[Si](C)(C)C | 4101.9 | Semi standard non polar | 33892256 | | DG(10:0/0:0/PGE2),4TMS,isomer #1 | CCCCCCCCCC(=O)OC[C@H](COC(=O)CCC/C=C\CC1=C(O[Si](C)(C)C)C[C@@H](O[Si](C)(C)C)[C@@H]1/C=C/[C@H](CCCCC)O[Si](C)(C)C)O[Si](C)(C)C | 3792.0 | Standard non polar | 33892256 | | DG(10:0/0:0/PGE2),4TMS,isomer #1 | CCCCCCCCCC(=O)OC[C@H](COC(=O)CCC/C=C\CC1=C(O[Si](C)(C)C)C[C@@H](O[Si](C)(C)C)[C@@H]1/C=C/[C@H](CCCCC)O[Si](C)(C)C)O[Si](C)(C)C | 4363.0 | Standard polar | 33892256 | | DG(10:0/0:0/PGE2),4TMS,isomer #2 | CCCCCCCCCC(=O)OC[C@H](COC(=O)CCC/C=C\C[C@H]1C(O[Si](C)(C)C)=C[C@@H](O[Si](C)(C)C)[C@@H]1/C=C/[C@H](CCCCC)O[Si](C)(C)C)O[Si](C)(C)C | 4092.8 | Semi standard non polar | 33892256 | | DG(10:0/0:0/PGE2),4TMS,isomer #2 | CCCCCCCCCC(=O)OC[C@H](COC(=O)CCC/C=C\C[C@H]1C(O[Si](C)(C)C)=C[C@@H](O[Si](C)(C)C)[C@@H]1/C=C/[C@H](CCCCC)O[Si](C)(C)C)O[Si](C)(C)C | 3505.1 | Standard non polar | 33892256 | | DG(10:0/0:0/PGE2),4TMS,isomer #2 | CCCCCCCCCC(=O)OC[C@H](COC(=O)CCC/C=C\C[C@H]1C(O[Si](C)(C)C)=C[C@@H](O[Si](C)(C)C)[C@@H]1/C=C/[C@H](CCCCC)O[Si](C)(C)C)O[Si](C)(C)C | 4449.1 | Standard polar | 33892256 |
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