| Record Information |
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| Version | 5.0 |
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| Status | Predicted |
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| Creation Date | 2021-09-19 05:05:01 UTC |
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| Update Date | 2022-11-30 20:10:07 UTC |
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| HMDB ID | HMDB0296921 |
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| Secondary Accession Numbers | None |
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| Metabolite Identification |
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| Common Name | DG(2:0/0:0/PGJ2) |
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| Description | DG(2:0/0:0/PGJ2) belongs to the class of organic compounds known as prostaglandins and related compounds. These are unsaturated carboxylic acids consisting of a 20 carbon skeleton that also contains a five member ring, and are based upon the fatty acid arachidonic acid. Based on a literature review very few articles have been published on DG(2:0/0:0/PGJ2). |
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| Structure | CCCCC[C@H](O)\C=C\[C@@H]1[C@@H](C\C=C/CCCC(=O)OC[C@H](O)COC(C)=O)C=CC1=O InChI=1S/C25H38O7/c1-3-4-7-11-21(27)14-15-23-20(13-16-24(23)29)10-8-5-6-9-12-25(30)32-18-22(28)17-31-19(2)26/h5,8,13-16,20-23,27-28H,3-4,6-7,9-12,17-18H2,1-2H3/b8-5-,15-14+/t20-,21-,22+,23+/m0/s1 |
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| Synonyms | | Value | Source |
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| (2R)-3-(Acetyloxy)-2-hydroxypropyl (5Z)-7-[(1S,5R)-5-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-4-oxocyclopent-2-en-1-yl]hept-5-enoic acid | HMDB |
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| Chemical Formula | C25H38O7 |
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| Average Molecular Weight | 450.572 |
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| Monoisotopic Molecular Weight | 450.261753564 |
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| IUPAC Name | (2R)-3-(acetyloxy)-2-hydroxypropyl (5Z)-7-[(1S,5R)-5-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-4-oxocyclopent-2-en-1-yl]hept-5-enoate |
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| Traditional Name | (2R)-3-(acetyloxy)-2-hydroxypropyl (5Z)-7-[(1S,5R)-5-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-4-oxocyclopent-2-en-1-yl]hept-5-enoate |
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| CAS Registry Number | Not Available |
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| SMILES | CCCCC[C@H](O)\C=C\[C@@H]1[C@@H](C\C=C/CCCC(=O)OC[C@H](O)COC(C)=O)C=CC1=O |
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| InChI Identifier | InChI=1S/C25H38O7/c1-3-4-7-11-21(27)14-15-23-20(13-16-24(23)29)10-8-5-6-9-12-25(30)32-18-22(28)17-31-19(2)26/h5,8,13-16,20-23,27-28H,3-4,6-7,9-12,17-18H2,1-2H3/b8-5-,15-14+/t20-,21-,22+,23+/m0/s1 |
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| InChI Key | SFIBBHUOEANMLY-AFBJFUDOSA-N |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as prostaglandins and related compounds. These are unsaturated carboxylic acids consisting of a 20 carbon skeleton that also contains a five member ring, and are based upon the fatty acid arachidonic acid. |
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| Kingdom | Organic compounds |
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| Super Class | Lipids and lipid-like molecules |
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| Class | Fatty Acyls |
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| Sub Class | Eicosanoids |
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| Direct Parent | Prostaglandins and related compounds |
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| Alternative Parents | |
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| Substituents | - Prostaglandin skeleton
- Diradylglycerol
- Diacylglycerol
- 1,3-acyl-sn-glycerol
- Fatty alcohol
- Glycerolipid
- Fatty acid ester
- Dicarboxylic acid or derivatives
- Cyclic ketone
- Secondary alcohol
- Ketone
- Carboxylic acid ester
- Carboxylic acid derivative
- Organic oxygen compound
- Organic oxide
- Hydrocarbon derivative
- Organooxygen compound
- Carbonyl group
- Alcohol
- Aliphatic homomonocyclic compound
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| Molecular Framework | Aliphatic homomonocyclic compounds |
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| External Descriptors | Not Available |
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| Ontology |
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| Physiological effect | Not Available |
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| Disposition | |
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| Process | Not Available |
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| Role | Not Available |
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| Physical Properties |
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| State | Not Available |
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| Experimental Molecular Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Experimental Chromatographic Properties | Not Available |
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| Predicted Molecular Properties | |
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| Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Retention Times Underivatized| Chromatographic Method | Retention Time | Reference |
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| Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022. | 7.61 minutes | 32390414 | | Predicted by Siyang on May 30, 2022 | 15.9027 minutes | 33406817 | | Predicted by Siyang using ReTip algorithm on June 8, 2022 | 0.63 minutes | 32390414 | | Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid | 3177.8 seconds | 40023050 | | Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid | 205.0 seconds | 40023050 | | Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid | 203.0 seconds | 40023050 | | Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid | 179.3 seconds | 40023050 | | RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 198.8 seconds | 40023050 | | Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid | 693.5 seconds | 40023050 | | BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid | 554.8 seconds | 40023050 | | HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate) | 141.7 seconds | 40023050 | | UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid | 1536.6 seconds | 40023050 | | BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid | 607.6 seconds | 40023050 | | UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid | 1682.5 seconds | 40023050 | | SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 464.2 seconds | 40023050 | | RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 485.2 seconds | 40023050 | | MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate | 278.9 seconds | 40023050 | | KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA | 196.0 seconds | 40023050 | | Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water | 8.2 seconds | 40023050 |
Predicted Kovats Retention IndicesDerivatized| Derivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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| DG(2:0/0:0/PGJ2),3TMS,isomer #1 | CCCCC[C@@H](/C=C/C1=C(O[Si](C)(C)C)C=C[C@@H]1C/C=C\CCCC(=O)OC[C@@H](COC(C)=O)O[Si](C)(C)C)O[Si](C)(C)C | 3489.1 | Semi standard non polar | 33892256 | | DG(2:0/0:0/PGJ2),3TMS,isomer #1 | CCCCC[C@@H](/C=C/C1=C(O[Si](C)(C)C)C=C[C@@H]1C/C=C\CCCC(=O)OC[C@@H](COC(C)=O)O[Si](C)(C)C)O[Si](C)(C)C | 3211.3 | Standard non polar | 33892256 | | DG(2:0/0:0/PGJ2),3TMS,isomer #1 | CCCCC[C@@H](/C=C/C1=C(O[Si](C)(C)C)C=C[C@@H]1C/C=C\CCCC(=O)OC[C@@H](COC(C)=O)O[Si](C)(C)C)O[Si](C)(C)C | 3990.8 | Standard polar | 33892256 | | DG(2:0/0:0/PGJ2),3TBDMS,isomer #1 | CCCCC[C@@H](/C=C/C1=C(O[Si](C)(C)C(C)(C)C)C=C[C@@H]1C/C=C\CCCC(=O)OC[C@@H](COC(C)=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C | 4130.9 | Semi standard non polar | 33892256 | | DG(2:0/0:0/PGJ2),3TBDMS,isomer #1 | CCCCC[C@@H](/C=C/C1=C(O[Si](C)(C)C(C)(C)C)C=C[C@@H]1C/C=C\CCCC(=O)OC[C@@H](COC(C)=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C | 3710.9 | Standard non polar | 33892256 | | DG(2:0/0:0/PGJ2),3TBDMS,isomer #1 | CCCCC[C@@H](/C=C/C1=C(O[Si](C)(C)C(C)(C)C)C=C[C@@H]1C/C=C\CCCC(=O)OC[C@@H](COC(C)=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C | 4089.1 | Standard polar | 33892256 |
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