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Identification Taxonomy Ontology Physical properties Spectra Biological properties Concentrations Links References enzymes (131)transporters (1) Show 132 proteins XML

enzymes (131)transporters (1) Show 132 proteins

Record Information

Version

5.0

Status

Predicted

Creation Date

2021-09-19 06:34:30 UTC

Update Date

2022-11-30 20:10:13 UTC

HMDB ID

HMDB0297124

Secondary Accession Numbers

None

Metabolite Identification

Common Name

DG(PGF2alpha/8:0/0:0)

Description

DG(PGF2alpha/8:0/0:0) belongs to the class of organic compounds known as prostaglandins and related compounds. These are unsaturated carboxylic acids consisting of a 20 carbon skeleton that also contains a five member ring, and are based upon the fatty acid arachidonic acid. Based on a literature review very few articles have been published on DG(PGF2alpha/8:0/0:0).

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv1652309192108352D          

 39 39  0  0  1  0            999 V2000
    1.9864   -2.0942    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2719   -1.6817    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2719   -0.8567    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5575   -2.0942    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1570   -1.6817    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8715   -2.0942    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5859   -1.6817    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5859   -0.8567    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3004   -0.4442    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0149   -0.8567    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.1011   -1.6772    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.4880   -2.2292    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9081   -1.8487    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3206   -1.1343    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.1411   -1.0480    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7686   -0.5212    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.9401    0.2858    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3270    0.8378    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4985    1.6448    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.2831    1.8998    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8854    2.1968    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0570    3.0038    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4439    3.5558    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6154    4.3628    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0023    4.9149    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7009   -1.6817    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4153   -2.0942    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4153   -2.9192    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1298   -3.3317    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1298   -1.6817    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8443   -2.0942    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8443   -2.9192    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5588   -1.6817    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2732   -2.0942    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9877   -1.6817    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7022   -2.0942    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4166   -1.6817    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1311   -2.0942    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8456   -1.6817    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
 10  9  1  1  0  0  0
 10 11  1  0  0  0  0
 11 12  1  1  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  1  0  0  0
 14 16  1  0  0  0  0
 10 16  1  0  0  0  0
 16 17  1  6  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  1  0  0  0
 19 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
  1 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 27 30  1  1  0  0  0
 30 31  1  0  0  0  0
 31 32  2  0  0  0  0
 31 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
M  END

HMDB0297124
     RDKit          3D
DG(PGF2alpha/8:0/0:0)
 93 93  0  0  0  0  0  0  0  0999 V2000
  -14.7387   -0.2053    0.3444 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.4043    0.0562    1.0173 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.3825   -0.8417    0.3932 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9986   -0.6568    0.9947 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5299    0.7893    0.8085 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.4732    1.1328   -0.6701 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4946    0.2310   -1.3834 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1452    0.4801   -0.8513 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8061    1.7057   -0.7483 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2753   -0.5108   -0.4787 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9441   -0.1055    0.0101 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.8863   -0.5057    1.4273 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7504   -0.0491    2.0722 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0377   -0.7278   -0.9809 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6956   -0.6182   -0.9421 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7303   -1.1382   -0.1486 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0266   -1.9142    0.7779 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2824   -0.7753   -0.3933 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8872    0.3342    0.5255 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5211    0.7929    0.3201 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5610   -0.2363    0.5329 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3442   -0.5740   -0.5111 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4064   -1.5651   -0.4452 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7820   -1.1410   -0.8179 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.8705   -0.6490   -2.2483 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7699   -1.1006   -2.9841 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9374    0.8461   -2.1971 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0953    1.2505   -0.7460 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.8474    1.7837   -0.3500 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4076   -0.0400   -0.0466 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.8760   -0.3340    0.0231 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8295    0.4246   -0.4537 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2921    0.1626   -0.4021 C   0  0  1  0  0  0  0  0  0  0  0  0
    9.7764    0.3797   -1.7092 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.0245    1.1466    0.4700 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.4974    0.9183    0.5050 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.9523   -0.4063    1.0077 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.4846   -0.4041    0.9361 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.0263    0.7223    1.8022 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.8581   -1.2640    0.0420 H   0  0  0  0  0  0  0  0  0  0  0  0
  -14.7878    0.5008   -0.5294 H   0  0  0  0  0  0  0  0  0  0  0  0
  -15.5725    0.1096    1.0276 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.1808    1.1376    0.9284 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.5122   -0.2369    2.0973 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.6924   -1.8947    0.5734 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.3239   -0.6731   -0.7097 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.0855   -0.8261    2.0787 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2560   -1.3307    0.5742 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.2260    1.4922    1.2970 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4928    0.8375    1.1993 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4658    1.1375   -1.1313 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0663    2.1619   -0.7226 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5445    0.5040   -2.4722 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7452   -0.8428   -1.3200 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9134    0.9931   -0.0838 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7546   -0.1044    1.9927 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8986   -1.6107    1.5779 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9424    0.5922    2.7819 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4478   -0.5572   -2.0447 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2557   -1.8748   -0.8945 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7295   -1.7260   -0.2459 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2148   -0.4832   -1.4600 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0676    0.0549    1.5747 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5912    1.1814    0.3177 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6646    1.3337   -0.6435 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6941    1.5930    1.1075 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7045   -0.7159    1.4940 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1409   -0.0609   -1.4428 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1762   -2.5011   -1.0419 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4165   -1.9560    0.6181 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4428   -2.0628   -0.7595 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8207   -1.0327   -2.6777 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9081   -2.0701   -3.1611 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7759    1.2089   -2.8360 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9798    1.2258   -2.6335 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8002    2.0706   -0.5738 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9214    2.0086    0.6150 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0451   -0.0139    1.0030 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1660   -1.2514    0.5088 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5454    1.3531   -0.9576 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.5432   -0.8444   -0.0515 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.2130   -0.0902   -2.3868 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.6163    1.2107    1.5057 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.8658    2.1522    0.0136 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.9407    1.6930    1.1917 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.9061    1.1672   -0.4987 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.7084   -0.5326    2.0700 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.5852   -1.2773    0.4636 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.9123   -1.3613    1.3435 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.8102   -0.2311   -0.1073 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.4103    0.8312    2.7164 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.0884    0.5277    2.0973 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.0100    1.6899    1.2413 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  8 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 11 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  2  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 25 26  1  0
 25 27  1  0
 27 28  1  0
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 28 30  1  0
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 31 32  2  0
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 35 36  1  0
 36 37  1  0
 37 38  1  0
 38 39  1  0
 30 24  1  0
  1 40  1  0
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  7 53  1  0
  7 54  1  0
 11 55  1  1
 12 56  1  0
 12 57  1  0
 13 58  1  0
 14 59  1  0
 14 60  1  0
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 23 69  1  0
 23 70  1  0
 24 71  1  6
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 27 74  1  0
 27 75  1  0
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 31 79  1  0
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 33 81  1  1
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 36 85  1  0
 36 86  1  0
 37 87  1  0
 37 88  1  0
 38 89  1  0
 38 90  1  0
 39 91  1  0
 39 92  1  0
 39 93  1  0
M  END


  Mrv1652309192108352D          

 39 39  0  0  1  0            999 V2000
    1.9864   -2.0942    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2719   -1.6817    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2719   -0.8567    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5575   -2.0942    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1570   -1.6817    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8715   -2.0942    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5859   -1.6817    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5859   -0.8567    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3004   -0.4442    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0149   -0.8567    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.1011   -1.6772    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.4880   -2.2292    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9081   -1.8487    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3206   -1.1343    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.1411   -1.0480    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7686   -0.5212    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.9401    0.2858    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3270    0.8378    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4985    1.6448    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.2831    1.8998    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8854    2.1968    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0570    3.0038    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4439    3.5558    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6154    4.3628    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0023    4.9149    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7009   -1.6817    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4153   -2.0942    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4153   -2.9192    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1298   -3.3317    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1298   -1.6817    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8443   -2.0942    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8443   -2.9192    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5588   -1.6817    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2732   -2.0942    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9877   -1.6817    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7022   -2.0942    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4166   -1.6817    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1311   -2.0942    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8456   -1.6817    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
 10  9  1  1  0  0  0
 10 11  1  0  0  0  0
 11 12  1  1  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  1  0  0  0
 14 16  1  0  0  0  0
 10 16  1  0  0  0  0
 16 17  1  6  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  1  0  0  0
 19 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
  1 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 27 30  1  1  0  0  0
 30 31  1  0  0  0  0
 31 32  2  0  0  0  0
 31 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0297124

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCCCCC(=O)O[C@@H](CO)COC(=O)CCC\C=C\C[C@H]1[C@@H](O)C[C@@H](O)[C@@H]1\C=C\[C@@H](O)CCCCC

> <INCHI_IDENTIFIER>
InChI=1S/C31H54O8/c1-3-5-7-8-14-18-31(37)39-25(22-32)23-38-30(36)17-13-10-9-12-16-26-27(29(35)21-28(26)34)20-19-24(33)15-11-6-4-2/h9,12,19-20,24-29,32-35H,3-8,10-11,13-18,21-23H2,1-2H3/b12-9+,20-19+/t24-,25-,26+,27+,28-,29+/m0/s1

> <INCHI_KEY>
JNKNRCZCPBUEMI-RSSOPWOWSA-N

> <FORMULA>
C31H54O8

> <MOLECULAR_WEIGHT>
554.765

> <EXACT_MASS>
554.381868699

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
93

> <JCHEM_AVERAGE_POLARIZABILITY>
66.05588033920702

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S)-1-{[(5E)-7-[(1R,2R,3R,5S)-3,5-dihydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]cyclopentyl]hept-5-enoyl]oxy}-3-hydroxypropan-2-yl octanoate

> <ALOGPS_LOGP>
4.60

> <JCHEM_LOGP>
4.801016101666665

> <ALOGPS_LOGS>
-4.93

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.759565622305352

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.243672940422684

> <JCHEM_PKA_STRONGEST_BASIC>
-1.6263115438208553

> <JCHEM_POLAR_SURFACE_AREA>
133.52

> <JCHEM_REFRACTIVITY>
154.27799999999996

> <JCHEM_ROTATABLE_BOND_COUNT>
24

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
6.57e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-1-{[(5E)-7-[(1R,2R,3R,5S)-3,5-dihydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]cyclopentyl]hept-5-enoyl]oxy}-3-hydroxypropan-2-yl octanoate

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0297124
     RDKit          3D
DG(PGF2alpha/8:0/0:0)
 93 93  0  0  0  0  0  0  0  0999 V2000
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    3.1762   -2.5011   -1.0419 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4165   -1.9560    0.6181 H   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
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  6  7  1  0
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  8 10  1  0
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 38 39  1  0
 30 24  1  0
  1 40  1  0
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  2 43  1  0
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  5 50  1  0
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  6 52  1  0
  7 53  1  0
  7 54  1  0
 11 55  1  1
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 24 71  1  6
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 36 85  1  0
 36 86  1  0
 37 87  1  0
 37 88  1  0
 38 89  1  0
 38 90  1  0
 39 91  1  0
 39 92  1  0
 39 93  1  0
M  END

HEADER    PROTEIN                                 19-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   19-SEP-21         0                                  
HETATM    1  O   UNK     0       3.708  -3.909   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       2.374  -3.139   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       2.374  -1.599   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       1.041  -3.909   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -0.293  -3.139   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.627  -3.909   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -2.960  -3.139   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -2.960  -1.599   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -4.294  -0.829   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -5.628  -1.599   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -5.789  -3.131   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      -4.644  -4.161   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      -7.295  -3.451   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -8.065  -2.117   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      -9.597  -1.956   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      -7.035  -0.973   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -7.355   0.534   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -6.210   1.564   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -6.531   3.070   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      -7.995   3.546   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      -5.386   4.101   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -5.706   5.607   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -4.562   6.638   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -4.882   8.144   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -3.738   9.174   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       5.042  -3.139   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       6.375  -3.909   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       6.375  -5.449   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       7.709  -6.219   0.000  0.00  0.00           O+0
HETATM   30  O   UNK     0       7.709  -3.139   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0       9.043  -3.909   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0       9.043  -5.449   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0      10.376  -3.139   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      11.710  -3.909   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      13.044  -3.139   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      14.377  -3.909   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      15.711  -3.139   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      17.045  -3.909   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      18.378  -3.139   0.000  0.00  0.00           C+0
CONECT    1    2   26                                                       
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   16                                                  
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   10   17                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24                                                            
CONECT   26    1   27                                                       
CONECT   27   26   28   30                                                  
CONECT   28   27   29                                                       
CONECT   29   28                                                            
CONECT   30   27   31                                                       
CONECT   31   30   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38                                                            
MASTER        0    0    0    0    0    0    0    0   39    0   78    0
END

COMPND    HMDB0297124
HETATM    1  C1  UNL     1     -14.739  -0.205   0.344  1.00  0.00           C  
HETATM    2  C2  UNL     1     -13.404   0.056   1.017  1.00  0.00           C  
HETATM    3  C3  UNL     1     -12.383  -0.842   0.393  1.00  0.00           C  
HETATM    4  C4  UNL     1     -10.999  -0.657   0.995  1.00  0.00           C  
HETATM    5  C5  UNL     1     -10.530   0.789   0.809  1.00  0.00           C  
HETATM    6  C6  UNL     1     -10.473   1.133  -0.670  1.00  0.00           C  
HETATM    7  C7  UNL     1      -9.495   0.231  -1.383  1.00  0.00           C  
HETATM    8  C8  UNL     1      -8.145   0.480  -0.851  1.00  0.00           C  
HETATM    9  O1  UNL     1      -7.806   1.706  -0.748  1.00  0.00           O  
HETATM   10  O2  UNL     1      -7.275  -0.511  -0.479  1.00  0.00           O  
HETATM   11  C9  UNL     1      -5.944  -0.105   0.010  1.00  0.00           C  
HETATM   12  C10 UNL     1      -5.886  -0.506   1.427  1.00  0.00           C  
HETATM   13  O3  UNL     1      -4.750  -0.049   2.072  1.00  0.00           O  
HETATM   14  C11 UNL     1      -5.038  -0.728  -0.981  1.00  0.00           C  
HETATM   15  O4  UNL     1      -3.696  -0.618  -0.942  1.00  0.00           O  
HETATM   16  C12 UNL     1      -2.730  -1.138  -0.149  1.00  0.00           C  
HETATM   17  O5  UNL     1      -3.027  -1.914   0.778  1.00  0.00           O  
HETATM   18  C13 UNL     1      -1.282  -0.775  -0.393  1.00  0.00           C  
HETATM   19  C14 UNL     1      -0.887   0.334   0.526  1.00  0.00           C  
HETATM   20  C15 UNL     1       0.521   0.793   0.320  1.00  0.00           C  
HETATM   21  C16 UNL     1       1.561  -0.236   0.533  1.00  0.00           C  
HETATM   22  C17 UNL     1       2.344  -0.574  -0.511  1.00  0.00           C  
HETATM   23  C18 UNL     1       3.406  -1.565  -0.445  1.00  0.00           C  
HETATM   24  C19 UNL     1       4.782  -1.141  -0.818  1.00  0.00           C  
HETATM   25  C20 UNL     1       4.871  -0.649  -2.248  1.00  0.00           C  
HETATM   26  O6  UNL     1       3.770  -1.101  -2.984  1.00  0.00           O  
HETATM   27  C21 UNL     1       4.937   0.846  -2.197  1.00  0.00           C  
HETATM   28  C22 UNL     1       5.095   1.250  -0.746  1.00  0.00           C  
HETATM   29  O7  UNL     1       3.847   1.784  -0.350  1.00  0.00           O  
HETATM   30  C23 UNL     1       5.408  -0.040  -0.047  1.00  0.00           C  
HETATM   31  C24 UNL     1       6.876  -0.334   0.023  1.00  0.00           C  
HETATM   32  C25 UNL     1       7.829   0.425  -0.454  1.00  0.00           C  
HETATM   33  C26 UNL     1       9.292   0.163  -0.402  1.00  0.00           C  
HETATM   34  O8  UNL     1       9.776   0.380  -1.709  1.00  0.00           O  
HETATM   35  C27 UNL     1      10.024   1.147   0.470  1.00  0.00           C  
HETATM   36  C28 UNL     1      11.497   0.918   0.505  1.00  0.00           C  
HETATM   37  C29 UNL     1      11.952  -0.406   1.008  1.00  0.00           C  
HETATM   38  C30 UNL     1      13.485  -0.404   0.936  1.00  0.00           C  
HETATM   39  C31 UNL     1      14.026   0.722   1.802  1.00  0.00           C  
HETATM   40  H1  UNL     1     -14.858  -1.264   0.042  1.00  0.00           H  
HETATM   41  H2  UNL     1     -14.788   0.501  -0.529  1.00  0.00           H  
HETATM   42  H3  UNL     1     -15.573   0.110   1.028  1.00  0.00           H  
HETATM   43  H4  UNL     1     -13.181   1.138   0.928  1.00  0.00           H  
HETATM   44  H5  UNL     1     -13.512  -0.237   2.097  1.00  0.00           H  
HETATM   45  H6  UNL     1     -12.692  -1.895   0.573  1.00  0.00           H  
HETATM   46  H7  UNL     1     -12.324  -0.673  -0.710  1.00  0.00           H  
HETATM   47  H8  UNL     1     -11.085  -0.826   2.079  1.00  0.00           H  
HETATM   48  H9  UNL     1     -10.256  -1.331   0.574  1.00  0.00           H  
HETATM   49  H10 UNL     1     -11.226   1.492   1.297  1.00  0.00           H  
HETATM   50  H11 UNL     1      -9.493   0.838   1.199  1.00  0.00           H  
HETATM   51  H12 UNL     1     -11.466   1.137  -1.131  1.00  0.00           H  
HETATM   52  H13 UNL     1     -10.066   2.162  -0.723  1.00  0.00           H  
HETATM   53  H14 UNL     1      -9.545   0.504  -2.472  1.00  0.00           H  
HETATM   54  H15 UNL     1      -9.745  -0.843  -1.320  1.00  0.00           H  
HETATM   55  H16 UNL     1      -5.913   0.993  -0.084  1.00  0.00           H  
HETATM   56  H17 UNL     1      -6.755  -0.104   1.993  1.00  0.00           H  
HETATM   57  H18 UNL     1      -5.899  -1.611   1.578  1.00  0.00           H  
HETATM   58  H19 UNL     1      -4.942   0.592   2.782  1.00  0.00           H  
HETATM   59  H20 UNL     1      -5.448  -0.557  -2.045  1.00  0.00           H  
HETATM   60  H21 UNL     1      -5.256  -1.875  -0.895  1.00  0.00           H  
HETATM   61  H22 UNL     1      -0.729  -1.726  -0.246  1.00  0.00           H  
HETATM   62  H23 UNL     1      -1.215  -0.483  -1.460  1.00  0.00           H  
HETATM   63  H24 UNL     1      -1.068   0.055   1.575  1.00  0.00           H  
HETATM   64  H25 UNL     1      -1.591   1.181   0.318  1.00  0.00           H  
HETATM   65  H26 UNL     1       0.665   1.334  -0.644  1.00  0.00           H  
HETATM   66  H27 UNL     1       0.694   1.593   1.107  1.00  0.00           H  
HETATM   67  H28 UNL     1       1.704  -0.716   1.494  1.00  0.00           H  
HETATM   68  H29 UNL     1       2.141  -0.061  -1.443  1.00  0.00           H  
HETATM   69  H30 UNL     1       3.176  -2.501  -1.042  1.00  0.00           H  
HETATM   70  H31 UNL     1       3.417  -1.956   0.618  1.00  0.00           H  
HETATM   71  H32 UNL     1       5.443  -2.063  -0.760  1.00  0.00           H  
HETATM   72  H33 UNL     1       5.821  -1.033  -2.678  1.00  0.00           H  
HETATM   73  H34 UNL     1       3.908  -2.070  -3.161  1.00  0.00           H  
HETATM   74  H35 UNL     1       5.776   1.209  -2.836  1.00  0.00           H  
HETATM   75  H36 UNL     1       3.980   1.226  -2.633  1.00  0.00           H  
HETATM   76  H37 UNL     1       5.800   2.071  -0.574  1.00  0.00           H  
HETATM   77  H38 UNL     1       3.921   2.009   0.615  1.00  0.00           H  
HETATM   78  H39 UNL     1       5.045  -0.014   1.003  1.00  0.00           H  
HETATM   79  H40 UNL     1       7.166  -1.251   0.509  1.00  0.00           H  
HETATM   80  H41 UNL     1       7.545   1.353  -0.958  1.00  0.00           H  
HETATM   81  H42 UNL     1       9.543  -0.844  -0.051  1.00  0.00           H  
HETATM   82  H43 UNL     1       9.213  -0.090  -2.387  1.00  0.00           H  
HETATM   83  H44 UNL     1       9.616   1.211   1.506  1.00  0.00           H  
HETATM   84  H45 UNL     1       9.866   2.152   0.014  1.00  0.00           H  
HETATM   85  H46 UNL     1      11.941   1.693   1.192  1.00  0.00           H  
HETATM   86  H47 UNL     1      11.906   1.167  -0.499  1.00  0.00           H  
HETATM   87  H48 UNL     1      11.708  -0.533   2.070  1.00  0.00           H  
HETATM   88  H49 UNL     1      11.585  -1.277   0.464  1.00  0.00           H  
HETATM   89  H50 UNL     1      13.912  -1.361   1.344  1.00  0.00           H  
HETATM   90  H51 UNL     1      13.810  -0.231  -0.107  1.00  0.00           H  
HETATM   91  H52 UNL     1      13.410   0.831   2.716  1.00  0.00           H  
HETATM   92  H53 UNL     1      15.088   0.528   2.097  1.00  0.00           H  
HETATM   93  H54 UNL     1      14.010   1.690   1.241  1.00  0.00           H  
CONECT    1    2   40   41   42
CONECT    2    3   43   44
CONECT    3    4   45   46
CONECT    4    5   47   48
CONECT    5    6   49   50
CONECT    6    7   51   52
CONECT    7    8   53   54
CONECT    8    9    9   10
CONECT   10   11
CONECT   11   12   14   55
CONECT   12   13   56   57
CONECT   13   58
CONECT   14   15   59   60
CONECT   15   16
CONECT   16   17   17   18
CONECT   18   19   61   62
CONECT   19   20   63   64
CONECT   20   21   65   66
CONECT   21   22   22   67
CONECT   22   23   68
CONECT   23   24   69   70
CONECT   24   25   30   71
CONECT   25   26   27   72
CONECT   26   73
CONECT   27   28   74   75
CONECT   28   29   30   76
CONECT   29   77
CONECT   30   31   78
CONECT   31   32   32   79
CONECT   32   33   80
CONECT   33   34   35   81
CONECT   34   82
CONECT   35   36   83   84
CONECT   36   37   85   86
CONECT   37   38   87   88
CONECT   38   39   89   90
CONECT   39   91   92   93
END

HMDB0297124
     RDKit          3D
DG(PGF2alpha/8:0/0:0)
 93 93  0  0  0  0  0  0  0  0999 V2000
  -14.7387   -0.2053    0.3444 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.4043    0.0562    1.0173 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.3825   -0.8417    0.3932 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9986   -0.6568    0.9947 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5299    0.7893    0.8085 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.4732    1.1328   -0.6701 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4946    0.2310   -1.3834 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1452    0.4801   -0.8513 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8061    1.7057   -0.7483 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2753   -0.5108   -0.4787 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9441   -0.1055    0.0101 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.8863   -0.5057    1.4273 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7504   -0.0491    2.0722 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0377   -0.7278   -0.9809 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6956   -0.6182   -0.9421 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7303   -1.1382   -0.1486 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0266   -1.9142    0.7779 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2824   -0.7753   -0.3933 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8872    0.3342    0.5255 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5211    0.7929    0.3201 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5610   -0.2363    0.5329 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3442   -0.5740   -0.5111 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4064   -1.5651   -0.4452 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7820   -1.1410   -0.8179 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.8705   -0.6490   -2.2483 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7699   -1.1006   -2.9841 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9374    0.8461   -2.1971 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0953    1.2505   -0.7460 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.8474    1.7837   -0.3500 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4076   -0.0400   -0.0466 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.8760   -0.3340    0.0231 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8295    0.4246   -0.4537 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2921    0.1626   -0.4021 C   0  0  1  0  0  0  0  0  0  0  0  0
    9.7764    0.3797   -1.7092 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.0245    1.1466    0.4700 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.4974    0.9183    0.5050 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.9523   -0.4063    1.0077 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.4846   -0.4041    0.9361 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.0263    0.7223    1.8022 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.8581   -1.2640    0.0420 H   0  0  0  0  0  0  0  0  0  0  0  0
  -14.7878    0.5008   -0.5294 H   0  0  0  0  0  0  0  0  0  0  0  0
  -15.5725    0.1096    1.0276 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.1808    1.1376    0.9284 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.5122   -0.2369    2.0973 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.6924   -1.8947    0.5734 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.3239   -0.6731   -0.7097 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.0855   -0.8261    2.0787 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2560   -1.3307    0.5742 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.2260    1.4922    1.2970 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4928    0.8375    1.1993 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4658    1.1375   -1.1313 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0663    2.1619   -0.7226 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5445    0.5040   -2.4722 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7452   -0.8428   -1.3200 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9134    0.9931   -0.0838 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7546   -0.1044    1.9927 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8986   -1.6107    1.5779 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9424    0.5922    2.7819 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4478   -0.5572   -2.0447 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2557   -1.8748   -0.8945 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7295   -1.7260   -0.2459 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2148   -0.4832   -1.4600 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0676    0.0549    1.5747 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5912    1.1814    0.3177 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6646    1.3337   -0.6435 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6941    1.5930    1.1075 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7045   -0.7159    1.4940 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1409   -0.0609   -1.4428 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1762   -2.5011   -1.0419 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4165   -1.9560    0.6181 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4428   -2.0628   -0.7595 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8207   -1.0327   -2.6777 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9081   -2.0701   -3.1611 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7759    1.2089   -2.8360 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9798    1.2258   -2.6335 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8002    2.0706   -0.5738 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9214    2.0086    0.6150 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0451   -0.0139    1.0030 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1660   -1.2514    0.5088 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5454    1.3531   -0.9576 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.5432   -0.8444   -0.0515 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.2130   -0.0902   -2.3868 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.6163    1.2107    1.5057 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.8658    2.1522    0.0136 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.9407    1.6930    1.1917 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.9061    1.1672   -0.4987 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.7084   -0.5326    2.0700 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.5852   -1.2773    0.4636 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.9123   -1.3613    1.3435 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.8102   -0.2311   -0.1073 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.4103    0.8312    2.7164 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.0884    0.5277    2.0973 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.0100    1.6899    1.2413 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  8 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 11 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  2  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 25 26  1  0
 25 27  1  0
 27 28  1  0
 28 29  1  0
 28 30  1  0
 30 31  1  0
 31 32  2  0
 32 33  1  0
 33 34  1  0
 33 35  1  0
 35 36  1  0
 36 37  1  0
 37 38  1  0
 38 39  1  0
 30 24  1  0
  1 40  1  0
  1 41  1  0
  1 42  1  0
  2 43  1  0
  2 44  1  0
  3 45  1  0
  3 46  1  0
  4 47  1  0
  4 48  1  0
  5 49  1  0
  5 50  1  0
  6 51  1  0
  6 52  1  0
  7 53  1  0
  7 54  1  0
 11 55  1  1
 12 56  1  0
 12 57  1  0
 13 58  1  0
 14 59  1  0
 14 60  1  0
 18 61  1  0
 18 62  1  0
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 19 64  1  0
 20 65  1  0
 20 66  1  0
 21 67  1  0
 22 68  1  0
 23 69  1  0
 23 70  1  0
 24 71  1  6
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 31 79  1  0
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 34 82  1  0
 35 83  1  0
 35 84  1  0
 36 85  1  0
 36 86  1  0
 37 87  1  0
 37 88  1  0
 38 89  1  0
 38 90  1  0
 39 91  1  0
 39 92  1  0
 39 93  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
(2S)-1-{[(5E)-7-[(1R,2R,3R,5S)-3,5-dihydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]cyclopentyl]hept-5-enoyl]oxy}-3-hydroxypropan-2-yl octanoic acid	HMDB

Chemical Formula

C₃₁H₅₄O₈

Average Molecular Weight

554.765

Monoisotopic Molecular Weight

554.381868699

IUPAC Name

(2S)-1-{[(5E)-7-[(1R,2R,3R,5S)-3,5-dihydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]cyclopentyl]hept-5-enoyl]oxy}-3-hydroxypropan-2-yl octanoate

Traditional Name

(2S)-1-{[(5E)-7-[(1R,2R,3R,5S)-3,5-dihydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]cyclopentyl]hept-5-enoyl]oxy}-3-hydroxypropan-2-yl octanoate

CAS Registry Number

Not Available

SMILES

CCCCCCCC(=O)O[C@@H](CO)COC(=O)CCC\C=C\C[C@H]1[C@@H](O)C[C@@H](O)[C@@H]1\C=C\[C@@H](O)CCCCC

InChI Identifier

InChI=1S/C31H54O8/c1-3-5-7-8-14-18-31(37)39-25(22-32)23-38-30(36)17-13-10-9-12-16-26-27(29(35)21-28(26)34)20-19-24(33)15-11-6-4-2/h9,12,19-20,24-29,32-35H,3-8,10-11,13-18,21-23H2,1-2H3/b12-9+,20-19+/t24-,25-,26+,27+,28-,29+/m0/s1

InChI Key

JNKNRCZCPBUEMI-RSSOPWOWSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as prostaglandins and related compounds. These are unsaturated carboxylic acids consisting of a 20 carbon skeleton that also contains a five member ring, and are based upon the fatty acid arachidonic acid.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Eicosanoids

Direct Parent

Prostaglandins and related compounds

Alternative Parents

Substituents

Prostaglandin skeleton
Diradylglycerol
Diacylglycerol
1,2-acyl-sn-glycerol
Fatty alcohol
Glycerolipid
Fatty acid ester
Dicarboxylic acid or derivatives
Cyclopentanol
Cyclic alcohol
Secondary alcohol
Carboxylic acid ester
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic homomonocyclic compound

Molecular Framework

Aliphatic homomonocyclic compounds

External Descriptors

Not Available

Ontology

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	4.6	ALOGPS
logP	4.8	ChemAxon
logS	-4.9	ALOGPS
pKa (Strongest Acidic)	14.24	ChemAxon
pKa (Strongest Basic)	-1.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	133.52 Å²	ChemAxon
Rotatable Bond Count	24	ChemAxon
Refractivity	154.28 m³·mol⁻¹	ChemAxon
Polarizability	66.06 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
AllCCS	[M+H]+	241.613	32859911
AllCCS	[M+H-H2O]+	240.597	32859911
AllCCS	[M+Na]+	242.776	32859911
AllCCS	[M+NH4]+	242.521	32859911
AllCCS	[M-H]-	231.424	32859911
AllCCS	[M+Na-2H]-	235.335	32859911
AllCCS	[M+HCOO]-	239.768	32859911
DeepCCS	[M+H]+	242.5	30932474
DeepCCS	[M-H]-	240.675	30932474
DeepCCS	[M-2H]-	273.918	30932474
DeepCCS	[M+Na]+	248.106	30932474

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Predicted by Siyang on May 30, 2022	17.7978 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	1.21 minutes	32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	3870.8 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	180.3 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	246.6 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	185.5 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	433.3 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	864.0 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	715.7 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	188.2 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	1706.9 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	741.5 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	2084.6 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	514.0 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	521.5 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	231.0 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	202.9 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	8.3 seconds	40023050

Predicted Kovats Retention Indices

Not Available

Spectra

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(PGF2alpha/8:0/0:0) 10V, Positive-QTOF	splash10-004i-0000090000-9bc39d96af96acbaf3bc	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(PGF2alpha/8:0/0:0) 20V, Positive-QTOF	splash10-004i-0000090000-9bc39d96af96acbaf3bc	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(PGF2alpha/8:0/0:0) 40V, Positive-QTOF	splash10-00f0-0191910000-d4a4da3f126f0908e68b	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(PGF2alpha/8:0/0:0) 10V, Positive-QTOF	splash10-00di-0000090000-d1ec72681d16793ebda4	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(PGF2alpha/8:0/0:0) 20V, Positive-QTOF	splash10-0xr9-0080890000-35c3bf138c19c2853bcb	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(PGF2alpha/8:0/0:0) 40V, Positive-QTOF	splash10-0xxr-0080890000-4fc75afeb76aa5a609b7	2021-10-21	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

157005231

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Not Available

Only showing the first 10 proteins. There are 132 proteins in total.

Show all enzymes and transporters

Enzymes

Enzyme Details

1. Diacylglycerol kinase theta

General function:: Involved in diacylglycerol kinase activity
Specific function:: Phosphorylates diacylglycerol (DAG) to generate phosphatidic acid (PA). May regulate the activity of protein kinase C by controlling the balance between these two signaling lipids. Activated in the nucleus in response to alpha-thrombin and nerve growth factor. May be involved in cAMP- induced activation of NR5A1 and subsequent steroidogenic gene transcription by delivering PA as ligand for NR5A1. Acts synergistically with NR5A1 on CYP17 transcriptional activity
Gene Name:: DGKQ
Uniprot ID:: P52824
Molecular weight:: 101154.0

Enzyme Details

2. Pancreatic triacylglycerol lipase

General function:: Involved in catalytic activity
Specific function:: Not Available
Gene Name:: PNLIP
Uniprot ID:: P16233
Molecular weight:: 51156.48

Enzyme Details

3. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1

General function:: Involved in calcium ion binding
Specific function:: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
Gene Name:: PLCB1
Uniprot ID:: Q9NQ66
Molecular weight:: 138565.805

Enzyme Details

4. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4

General function:: Involved in calcium ion binding
Specific function:: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. This form has a role in retina signal transduction.
Gene Name:: PLCB4
Uniprot ID:: Q15147
Molecular weight:: 136105.065

Enzyme Details

5. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-2

General function:: Involved in calcium ion binding
Specific function:: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
Gene Name:: PLCB2
Uniprot ID:: Q00722
Molecular weight:: 134023.21

Enzyme Details

6. Diacylglycerol kinase gamma

General function:: Involved in diacylglycerol kinase activity
Specific function:: Reverses the normal flow of glycerolipid biosynthesis by phosphorylating diacylglycerol back to phosphatidic acid
Gene Name:: DGKG
Uniprot ID:: P49619
Molecular weight:: 89095.3

Enzyme Details

7. Hepatic triacylglycerol lipase

General function:: Involved in catalytic activity
Specific function:: Hepatic lipase has the capacity to catalyze hydrolysis of phospholipids, mono-, di-, and triglycerides, and acyl-CoA thioesters. It is an important enzyme in HDL metabolism. Hepatic lipase binds heparin.
Gene Name:: LIPC
Uniprot ID:: P11150
Molecular weight:: 55914.1

Enzyme Details

8. Lysosomal acid lipase/cholesteryl ester hydrolase

General function:: Involved in lipid metabolic process
Specific function:: Crucial for the intracellular hydrolysis of cholesteryl esters and triglycerides that have been internalized via receptor-mediated endocytosis of lipoprotein particles. Important in mediating the effect of LDL (low density lipoprotein) uptake on suppression of hydroxymethylglutaryl-CoA reductase and activation of endogenous cellular cholesteryl ester formation.
Gene Name:: LIPA
Uniprot ID:: P38571
Molecular weight:: 45418.71

Enzyme Details

9. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3

General function:: Involved in calcium ion binding
Specific function:: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
Gene Name:: PLCB3
Uniprot ID:: Q01970
Molecular weight:: 138797.725

Enzyme Details

10. Inactive pancreatic lipase-related protein 1

General function:: Involved in catalytic activity
Specific function:: May function as inhibitor of dietary triglyceride digestion. Lacks detectable lipase activity towards triglycerides, diglycerides, phosphatidylcholine, galactolipids or cholesterol esters (in vitro) (By similarity).
Gene Name:: PNLIPRP1
Uniprot ID:: P54315
Molecular weight:: Not Available

Transporters

Enzyme Details

1. Long-chain fatty acid transport protein 1

General function:: Lipid transport and metabolism
Specific function:: Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. The LFCA import appears to be hormone-regulated in a tissue-specific manner. In adipocytes, but not myocytes, insulin induces a rapid translocation of FATP1 from intracellular compartments to the plasma membrane, paralleled by increased LFCA uptake. May act directly as a bona fide transporter, or alternatively, in a cytoplasmic or membrane- associated multimeric protein complex to trap and draw fatty acids towards accumulation. Plays a pivotal role in regulating available LFCA substrates from exogenous sources in tissues undergoing high levels of beta-oxidation or triglyceride synthesis. May be involved in regulation of cholesterol metabolism. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids
Gene Name:: SLC27A1
Uniprot ID:: Q6PCB7
Molecular weight:: 71107.5

Only showing the first 10 proteins. There are 132 proteins in total.

Show all enzymes and transporters

Showing metabocard for DG(PGF2alpha/8:0/0:0) (HMDB0297124)

MOL for HMDB0297124 (DG(PGF2alpha/8:0/0:0))

3D MOL for HMDB0297124 (DG(PGF2alpha/8:0/0:0))

3D SDF for HMDB0297124 (DG(PGF2alpha/8:0/0:0))

3D-SDF for HMDB0297124 (DG(PGF2alpha/8:0/0:0))

PDB for HMDB0297124 (DG(PGF2alpha/8:0/0:0))

3D PDB for HMDB0297124 (DG(PGF2alpha/8:0/0:0))

SMILES for HMDB0297124 (DG(PGF2alpha/8:0/0:0))

INCHI for HMDB0297124 (DG(PGF2alpha/8:0/0:0))

Structure for HMDB0297124 (DG(PGF2alpha/8:0/0:0))

3D Structure for HMDB0297124 (DG(PGF2alpha/8:0/0:0))

Predicted Collision Cross Sections

Predicted Retention Times

Underivatized

Predicted Kovats Retention Indices

MS/MS Spectra

Enzymes

Transporters