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Identification Taxonomy Ontology Physical properties Spectra Biological properties Concentrations Links References enzymes (131)transporters (1) Show 132 proteins XML

enzymes (131)transporters (1) Show 132 proteins

Record Information

Version

5.0

Status

Predicted

Creation Date

2021-09-19 14:08:36 UTC

Update Date

2022-11-30 20:10:38 UTC

HMDB ID

HMDB0298162

Secondary Accession Numbers

None

Metabolite Identification

Common Name

DG(a-25:0/PGF2alpha/0:0)

Description

(2S)-2-{[(5E)-7-[(1R,2R,3R,5S)-3,5-dihydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]cyclopentyl]hept-5-enoyl]oxy}-3-hydroxypropyl 22-methyltetracosanoate belongs to the class of organic compounds known as prostaglandins and related compounds. These are unsaturated carboxylic acids consisting of a 20 carbon skeleton that also contains a five member ring, and are based upon the fatty acid arachidonic acid. Based on a literature review very few articles have been published on (2S)-2-{[(5E)-7-[(1R,2R,3R,5S)-3,5-dihydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]cyclopentyl]hept-5-enoyl]oxy}-3-hydroxypropyl 22-methyltetracosanoate.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv1652309192116092D          

 56 56  0  0  1  0            999 V2000
   -4.8237   -8.3052    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5382   -8.7177    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5382   -9.5427    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2527   -8.3052    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9671   -8.7177    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6816   -8.3052    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3961   -8.7177    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1105   -8.3052    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8250   -8.7177    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5395   -8.3052    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.2540   -8.7177    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.9684   -8.3052    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.6829   -8.7177    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.3974   -8.3052    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.1118   -8.7177    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.8263   -8.3052    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.5408   -8.7177    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -16.2552   -8.3052    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -16.9697   -8.7177    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -17.6842   -8.3052    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -18.3987   -8.7177    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -19.1131   -8.3052    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -19.8276   -8.7177    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -20.5421   -8.3052    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -20.5421   -7.4802    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -21.2565   -8.7177    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -21.9710   -8.3052    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1092   -8.7177    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3948   -8.3052    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.3948   -7.4802    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6803   -7.0677    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6803   -8.7177    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9658   -8.3052    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9658   -7.4802    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2514   -8.7177    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5369   -8.3052    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1776   -8.7177    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8921   -8.3052    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6065   -8.7177    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3210   -8.3052    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3210   -7.4802    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6536   -6.9953    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8689   -7.2502    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9085   -6.2107    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7335   -6.2107    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.2184   -5.5432    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9884   -6.9953    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.7731   -7.2502    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9446   -8.0572    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7292   -8.3122    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.9007   -9.1191    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3423   -7.7601    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1269   -8.0151    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7400   -7.4630    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5246   -7.7180    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1377   -7.1659    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 24 26  1  0  0  0  0
 26 27  1  0  0  0  0
  1 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 29 32  1  6  0  0  0
 32 33  1  0  0  0  0
 33 34  2  0  0  0  0
 33 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  2  0  0  0  0
 39 40  1  0  0  0  0
 41 40  1  1  0  0  0
 41 42  1  0  0  0  0
 42 43  1  1  0  0  0
 42 44  1  0  0  0  0
 44 45  1  0  0  0  0
 45 46  1  1  0  0  0
 45 47  1  0  0  0  0
 41 47  1  0  0  0  0
 47 48  1  6  0  0  0
 48 49  2  0  0  0  0
 49 50  1  0  0  0  0
 50 51  1  6  0  0  0
 50 52  1  0  0  0  0
 52 53  1  0  0  0  0
 53 54  1  0  0  0  0
 54 55  1  0  0  0  0
 55 56  1  0  0  0  0
M  END

HMDB0298162
     RDKit          3D
DG(a-25:0/PGF2alpha/0:0)
144144  0  0  0  0  0  0  0  0999 V2000
    5.7283    2.1997   -1.4565 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7703    3.6834   -1.3524 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5247    4.4084   -1.4722 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3971    4.5324   -0.6075 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5295    3.5579    0.0265 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0423    2.7986    1.1695 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.1239    2.0248    0.9765 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9688    1.8768    1.7342 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5979    2.0350    2.9867 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5779    1.2128    3.6412 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0916    0.0493    2.8458 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0525   -0.4669    3.5012 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1393   -1.0170    2.9797 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6354   -0.8359    4.3940 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1913   -1.8524    5.2342 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2513    0.5296    4.8388 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2976    0.5473    6.0306 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0268    1.9902    6.3617 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2764    2.4578    6.2988 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5964    3.8898    6.6246 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1751    4.5786    5.4014 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4369    3.8631    5.0012 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0112    4.4670    3.7509 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0674    3.9697    3.3035 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4319    5.5107    3.0954 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9034    6.1144    1.8935 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.1136    7.5755    1.9648 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9781    8.3068    2.2798 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8958    5.6941    0.8538 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1133    6.1811   -0.4367 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2184    5.7303   -1.3929 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3144    4.9317   -1.0353 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2858    6.1452   -2.7938 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4301    5.1848   -3.6540 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0432    3.8272   -3.6064 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1856    2.8026   -4.3161 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0132    1.5115   -4.2369 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3329    0.3124   -4.7605 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1008   -0.0652   -3.9539 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4966   -0.3254   -2.5028 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4985   -1.4535   -2.4387 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0076   -1.7665   -1.0718 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0140   -2.8861   -1.1689 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4704   -4.1939   -1.6232 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5399   -5.2430   -1.8098 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9030   -6.5397   -2.1813 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0164   -6.5026   -3.3918 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4262   -7.8514   -3.6835 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4081   -7.9151   -4.7403 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9393   -7.3220   -4.5263 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0818   -5.8999   -4.1949 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5707   -5.4989   -4.1448 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3461   -6.2437   -3.1173 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7764   -5.7347   -3.1838 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8393   -6.0868   -1.7089 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8493   -4.6519   -1.2321 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7095    1.8070   -1.6191 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1947    1.6460   -0.6373 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3124    1.8929   -2.3867 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2883    3.9051   -0.3531 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5625    4.0846   -2.0802 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8485    5.5188   -1.7418 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1194    4.1567   -2.5601 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7335    5.3163    0.2294 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6500    5.2987   -1.1375 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1630    2.7734   -0.7489 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5309    4.0197    0.3346 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2596    3.5756    1.9870 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8998    1.1057    0.7109 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5077    1.1134    1.1491 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0584    2.8180    3.6056 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2877    1.8161    3.9686 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2230    0.2683    1.8160 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0394   -1.4572    3.4312 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9220   -0.9755    2.2183 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6415   -2.0262    2.9420 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7560   -0.9138    4.3301 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7891   -2.0057    6.0103 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1383    1.1340    5.1392 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8433    0.0719    6.8601 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5963   -0.0152    5.7761 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7687    2.6421    6.6536 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0258    1.7348    6.0068 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6409    4.3641    6.9300 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3112    3.8886    7.4617 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3648    5.6416    5.6531 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4185    4.5863    4.5902 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1820    3.9884    5.8019 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1713    2.8169    4.7689 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8670    5.6315    1.5659 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3939    7.9116    0.9245 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9880    7.8180    2.5828 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4613    7.7850    2.9382 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8671    6.0429    1.1792 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7897    4.5869    0.8136 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8896    7.1528   -3.0037 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3284    6.0933   -3.1797 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5294    5.5778   -4.6966 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3803    5.2317   -3.3684 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2197    3.5070   -2.5569 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0270    3.8671   -4.1671 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0511    3.0888   -5.3807 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2544    2.5855   -3.7926 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652309192116092D          

 56 56  0  0  1  0            999 V2000
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  1  2  1  0  0  0  0
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  1 28  1  0  0  0  0
 28 29  1  0  0  0  0
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 32 33  1  0  0  0  0
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 33 35  1  0  0  0  0
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 49 50  1  0  0  0  0
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 53 54  1  0  0  0  0
 54 55  1  0  0  0  0
 55 56  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0298162

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCC[C@H](O)\C=C\[C@H]1[C@H](O)C[C@H](O)[C@@H]1C\C=C\CCCC(=O)O[C@@H](CO)COC(=O)CCCCCCCCCCCCCCCCCCCCC(C)CC

> <INCHI_IDENTIFIER>
InChI=1S/C48H88O8/c1-4-6-25-31-41(50)35-36-44-43(45(51)37-46(44)52)32-27-23-24-29-34-48(54)56-42(38-49)39-55-47(53)33-28-22-20-18-16-14-12-10-8-7-9-11-13-15-17-19-21-26-30-40(3)5-2/h23,27,35-36,40-46,49-52H,4-22,24-26,28-34,37-39H2,1-3H3/b27-23+,36-35+/t40?,41-,42-,43+,44+,45-,46+/m0/s1

> <INCHI_KEY>
LAUZWAYHHFODDE-LJPSCIMJSA-N

> <FORMULA>
C48H88O8

> <MOLECULAR_WEIGHT>
793.224

> <EXACT_MASS>
792.647919794

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
144

> <JCHEM_AVERAGE_POLARIZABILITY>
101.28217272165864

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S)-2-{[(5E)-7-[(1R,2R,3R,5S)-3,5-dihydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]cyclopentyl]hept-5-enoyl]oxy}-3-hydroxypropyl 22-methyltetracosanoate

> <ALOGPS_LOGP>
9.04

> <JCHEM_LOGP>
12.201133838

> <ALOGPS_LOGS>
-6.85

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.759565621763862

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.243672939710535

> <JCHEM_PKA_STRONGEST_BASIC>
-1.6263115438075015

> <JCHEM_POLAR_SURFACE_AREA>
133.52

> <JCHEM_REFRACTIVITY>
232.44260000000006

> <JCHEM_ROTATABLE_BOND_COUNT>
40

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.12e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-2-{[(5E)-7-[(1R,2R,3R,5S)-3,5-dihydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]cyclopentyl]hept-5-enoyl]oxy}-3-hydroxypropyl 22-methyltetracosanoate

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0298162
     RDKit          3D
DG(a-25:0/PGF2alpha/0:0)
144144  0  0  0  0  0  0  0  0999 V2000
    5.7283    2.1997   -1.4565 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7703    3.6834   -1.3524 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5247    4.4084   -1.4722 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3971    4.5324   -0.6075 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5295    3.5579    0.0265 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0423    2.7986    1.1695 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.1239    2.0248    0.9765 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9688    1.8768    1.7342 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5979    2.0350    2.9867 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5779    1.2128    3.6412 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0916    0.0493    2.8458 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0525   -0.4669    3.5012 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1393   -1.0170    2.9797 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6354   -0.8359    4.3940 C   0  0  2  0  0  0  0  0  0  0  0  0
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M  END

HEADER    PROTEIN                                 19-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   19-SEP-21         0                                  
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HETATM   30  C   UNK     0      -6.337 -13.963   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0      -5.003 -13.193   0.000  0.00  0.00           O+0
HETATM   32  O   UNK     0      -5.003 -16.273   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0      -3.670 -15.503   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      -3.670 -13.963   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0      -2.336 -16.273   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      -1.002 -15.503   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       0.331 -16.273   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0       1.665 -15.503   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0       2.999 -16.273   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0       4.333 -15.503   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0       4.333 -13.963   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0       3.087 -13.058   0.000  0.00  0.00           C+0
HETATM   43  O   UNK     0       1.622 -13.534   0.000  0.00  0.00           O+0
HETATM   44  C   UNK     0       3.563 -11.593   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0       5.103 -11.593   0.000  0.00  0.00           C+0
HETATM   46  O   UNK     0       6.008 -10.347   0.000  0.00  0.00           O+0
HETATM   47  C   UNK     0       5.578 -13.058   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0       7.043 -13.534   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0       7.363 -15.040   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0       8.828 -15.516   0.000  0.00  0.00           C+0
HETATM   51  O   UNK     0       9.148 -17.022   0.000  0.00  0.00           O+0
HETATM   52  C   UNK     0       9.972 -14.486   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      11.437 -14.961   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      12.581 -13.931   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0      14.046 -14.407   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0      15.190 -13.376   0.000  0.00  0.00           C+0
CONECT    1    2   28                                                       
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27                                                       
CONECT   27   26                                                            
CONECT   28    1   29                                                       
CONECT   29   28   30   32                                                  
CONECT   30   29   31                                                       
CONECT   31   30                                                            
CONECT   32   29   33                                                       
CONECT   33   32   34   35                                                  
CONECT   34   33                                                            
CONECT   35   33   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40   42   47                                                  
CONECT   42   41   43   44                                                  
CONECT   43   42                                                            
CONECT   44   42   45                                                       
CONECT   45   44   46   47                                                  
CONECT   46   45                                                            
CONECT   47   45   41   48                                                  
CONECT   48   47   49                                                       
CONECT   49   48   50                                                       
CONECT   50   49   51   52                                                  
CONECT   51   50                                                            
CONECT   52   50   53                                                       
CONECT   53   52   54                                                       
CONECT   54   53   55                                                       
CONECT   55   54   56                                                       
CONECT   56   55                                                            
MASTER        0    0    0    0    0    0    0    0   56    0  112    0
END

COMPND    HMDB0298162
HETATM    1  C1  UNL     1       5.728   2.200  -1.457  1.00  0.00           C  
HETATM    2  C2  UNL     1       5.770   3.683  -1.352  1.00  0.00           C  
HETATM    3  C3  UNL     1       4.525   4.408  -1.472  1.00  0.00           C  
HETATM    4  C4  UNL     1       3.397   4.532  -0.608  1.00  0.00           C  
HETATM    5  C5  UNL     1       2.529   3.558   0.027  1.00  0.00           C  
HETATM    6  C6  UNL     1       3.042   2.799   1.170  1.00  0.00           C  
HETATM    7  O1  UNL     1       4.124   2.025   0.976  1.00  0.00           O  
HETATM    8  C7  UNL     1       1.969   1.877   1.734  1.00  0.00           C  
HETATM    9  C8  UNL     1       1.598   2.035   2.987  1.00  0.00           C  
HETATM   10  C9  UNL     1       0.578   1.213   3.641  1.00  0.00           C  
HETATM   11  C10 UNL     1       0.092   0.049   2.846  1.00  0.00           C  
HETATM   12  O2  UNL     1      -1.053  -0.467   3.501  1.00  0.00           O  
HETATM   13  C11 UNL     1       1.139  -1.017   2.980  1.00  0.00           C  
HETATM   14  C12 UNL     1       1.635  -0.836   4.394  1.00  0.00           C  
HETATM   15  O3  UNL     1       1.191  -1.852   5.234  1.00  0.00           O  
HETATM   16  C13 UNL     1       1.251   0.530   4.839  1.00  0.00           C  
HETATM   17  C14 UNL     1       0.298   0.547   6.031  1.00  0.00           C  
HETATM   18  C15 UNL     1      -0.027   1.990   6.362  1.00  0.00           C  
HETATM   19  C16 UNL     1      -1.276   2.458   6.299  1.00  0.00           C  
HETATM   20  C17 UNL     1      -1.596   3.890   6.625  1.00  0.00           C  
HETATM   21  C18 UNL     1      -2.175   4.579   5.401  1.00  0.00           C  
HETATM   22  C19 UNL     1      -3.437   3.863   5.001  1.00  0.00           C  
HETATM   23  C20 UNL     1      -4.011   4.467   3.751  1.00  0.00           C  
HETATM   24  O4  UNL     1      -5.067   3.970   3.304  1.00  0.00           O  
HETATM   25  O5  UNL     1      -3.432   5.511   3.095  1.00  0.00           O  
HETATM   26  C21 UNL     1      -3.903   6.114   1.894  1.00  0.00           C  
HETATM   27  C22 UNL     1      -4.114   7.576   1.965  1.00  0.00           C  
HETATM   28  O6  UNL     1      -2.978   8.307   2.280  1.00  0.00           O  
HETATM   29  C23 UNL     1      -2.896   5.694   0.854  1.00  0.00           C  
HETATM   30  O7  UNL     1      -3.113   6.181  -0.437  1.00  0.00           O  
HETATM   31  C24 UNL     1      -2.218   5.730  -1.393  1.00  0.00           C  
HETATM   32  O8  UNL     1      -1.314   4.932  -1.035  1.00  0.00           O  
HETATM   33  C25 UNL     1      -2.286   6.145  -2.794  1.00  0.00           C  
HETATM   34  C26 UNL     1      -1.430   5.185  -3.654  1.00  0.00           C  
HETATM   35  C27 UNL     1      -2.043   3.827  -3.606  1.00  0.00           C  
HETATM   36  C28 UNL     1      -1.186   2.803  -4.316  1.00  0.00           C  
HETATM   37  C29 UNL     1      -2.013   1.511  -4.237  1.00  0.00           C  
HETATM   38  C30 UNL     1      -1.333   0.312  -4.761  1.00  0.00           C  
HETATM   39  C31 UNL     1      -0.101  -0.065  -3.954  1.00  0.00           C  
HETATM   40  C32 UNL     1      -0.497  -0.325  -2.503  1.00  0.00           C  
HETATM   41  C33 UNL     1      -1.498  -1.453  -2.439  1.00  0.00           C  
HETATM   42  C34 UNL     1      -2.008  -1.766  -1.072  1.00  0.00           C  
HETATM   43  C35 UNL     1      -3.014  -2.886  -1.169  1.00  0.00           C  
HETATM   44  C36 UNL     1      -2.470  -4.194  -1.623  1.00  0.00           C  
HETATM   45  C37 UNL     1      -3.540  -5.243  -1.810  1.00  0.00           C  
HETATM   46  C38 UNL     1      -2.903  -6.540  -2.181  1.00  0.00           C  
HETATM   47  C39 UNL     1      -2.016  -6.503  -3.392  1.00  0.00           C  
HETATM   48  C40 UNL     1      -1.426  -7.851  -3.684  1.00  0.00           C  
HETATM   49  C41 UNL     1      -0.408  -7.915  -4.740  1.00  0.00           C  
HETATM   50  C42 UNL     1       0.939  -7.322  -4.526  1.00  0.00           C  
HETATM   51  C43 UNL     1       1.082  -5.900  -4.195  1.00  0.00           C  
HETATM   52  C44 UNL     1       2.571  -5.499  -4.145  1.00  0.00           C  
HETATM   53  C45 UNL     1       3.346  -6.244  -3.117  1.00  0.00           C  
HETATM   54  C46 UNL     1       4.776  -5.735  -3.184  1.00  0.00           C  
HETATM   55  C47 UNL     1       2.839  -6.087  -1.709  1.00  0.00           C  
HETATM   56  C48 UNL     1       2.849  -4.652  -1.232  1.00  0.00           C  
HETATM   57  H1  UNL     1       4.710   1.807  -1.619  1.00  0.00           H  
HETATM   58  H2  UNL     1       6.195   1.646  -0.637  1.00  0.00           H  
HETATM   59  H3  UNL     1       6.312   1.893  -2.387  1.00  0.00           H  
HETATM   60  H4  UNL     1       6.288   3.905  -0.353  1.00  0.00           H  
HETATM   61  H5  UNL     1       6.563   4.085  -2.080  1.00  0.00           H  
HETATM   62  H6  UNL     1       4.848   5.519  -1.742  1.00  0.00           H  
HETATM   63  H7  UNL     1       4.119   4.157  -2.560  1.00  0.00           H  
HETATM   64  H8  UNL     1       3.734   5.316   0.229  1.00  0.00           H  
HETATM   65  H9  UNL     1       2.650   5.299  -1.137  1.00  0.00           H  
HETATM   66  H10 UNL     1       2.163   2.773  -0.749  1.00  0.00           H  
HETATM   67  H11 UNL     1       1.531   4.020   0.335  1.00  0.00           H  
HETATM   68  H12 UNL     1       3.260   3.576   1.987  1.00  0.00           H  
HETATM   69  H13 UNL     1       3.900   1.106   0.711  1.00  0.00           H  
HETATM   70  H14 UNL     1       1.508   1.113   1.149  1.00  0.00           H  
HETATM   71  H15 UNL     1       2.058   2.818   3.606  1.00  0.00           H  
HETATM   72  H16 UNL     1      -0.288   1.816   3.969  1.00  0.00           H  
HETATM   73  H17 UNL     1      -0.223   0.268   1.816  1.00  0.00           H  
HETATM   74  H18 UNL     1      -1.039  -1.457   3.431  1.00  0.00           H  
HETATM   75  H19 UNL     1       1.922  -0.976   2.218  1.00  0.00           H  
HETATM   76  H20 UNL     1       0.642  -2.026   2.942  1.00  0.00           H  
HETATM   77  H21 UNL     1       2.756  -0.914   4.330  1.00  0.00           H  
HETATM   78  H22 UNL     1       1.789  -2.006   6.010  1.00  0.00           H  
HETATM   79  H23 UNL     1       2.138   1.134   5.139  1.00  0.00           H  
HETATM   80  H24 UNL     1       0.843   0.072   6.860  1.00  0.00           H  
HETATM   81  H25 UNL     1      -0.596  -0.015   5.776  1.00  0.00           H  
HETATM   82  H26 UNL     1       0.769   2.642   6.654  1.00  0.00           H  
HETATM   83  H27 UNL     1      -2.026   1.735   6.007  1.00  0.00           H  
HETATM   84  H28 UNL     1      -0.641   4.364   6.930  1.00  0.00           H  
HETATM   85  H29 UNL     1      -2.311   3.889   7.462  1.00  0.00           H  
HETATM   86  H30 UNL     1      -2.365   5.642   5.653  1.00  0.00           H  
HETATM   87  H31 UNL     1      -1.418   4.586   4.590  1.00  0.00           H  
HETATM   88  H32 UNL     1      -4.182   3.988   5.802  1.00  0.00           H  
HETATM   89  H33 UNL     1      -3.171   2.817   4.769  1.00  0.00           H  
HETATM   90  H34 UNL     1      -4.867   5.631   1.566  1.00  0.00           H  
HETATM   91  H35 UNL     1      -4.394   7.912   0.924  1.00  0.00           H  
HETATM   92  H36 UNL     1      -4.988   7.818   2.583  1.00  0.00           H  
HETATM   93  H37 UNL     1      -2.461   7.785   2.938  1.00  0.00           H  
HETATM   94  H38 UNL     1      -1.867   6.043   1.179  1.00  0.00           H  
HETATM   95  H39 UNL     1      -2.790   4.587   0.814  1.00  0.00           H  
HETATM   96  H40 UNL     1      -1.890   7.153  -3.004  1.00  0.00           H  
HETATM   97  H41 UNL     1      -3.328   6.093  -3.180  1.00  0.00           H  
HETATM   98  H42 UNL     1      -1.529   5.578  -4.697  1.00  0.00           H  
HETATM   99  H43 UNL     1      -0.380   5.232  -3.368  1.00  0.00           H  
HETATM  100  H44 UNL     1      -2.220   3.507  -2.557  1.00  0.00           H  
HETATM  101  H45 UNL     1      -3.027   3.867  -4.167  1.00  0.00           H  
HETATM  102  H46 UNL     1      -1.051   3.089  -5.381  1.00  0.00           H  
HETATM  103  H47 UNL     1      -0.254   2.585  -3.793  1.00  0.00           H  
HETATM  104  H48 UNL     1      -2.931   1.706  -4.826  1.00  0.00           H  
HETATM  105  H49 UNL     1      -2.331   1.445  -3.179  1.00  0.00           H  
HETATM  106  H50 UNL     1      -1.983  -0.551  -4.920  1.00  0.00           H  
HETATM  107  H51 UNL     1      -0.944   0.570  -5.790  1.00  0.00           H  
HETATM  108  H52 UNL     1       0.266  -1.026  -4.352  1.00  0.00           H  
HETATM  109  H53 UNL     1       0.700   0.663  -3.989  1.00  0.00           H  
HETATM  110  H54 UNL     1       0.422  -0.665  -1.993  1.00  0.00           H  
HETATM  111  H55 UNL     1      -0.840   0.585  -1.990  1.00  0.00           H  
HETATM  112  H56 UNL     1      -2.377  -1.199  -3.086  1.00  0.00           H  
HETATM  113  H57 UNL     1      -1.075  -2.371  -2.888  1.00  0.00           H  
HETATM  114  H58 UNL     1      -2.498  -0.920  -0.569  1.00  0.00           H  
HETATM  115  H59 UNL     1      -1.161  -2.066  -0.408  1.00  0.00           H  
HETATM  116  H60 UNL     1      -3.467  -2.989  -0.155  1.00  0.00           H  
HETATM  117  H61 UNL     1      -3.823  -2.576  -1.865  1.00  0.00           H  
HETATM  118  H62 UNL     1      -1.844  -4.058  -2.503  1.00  0.00           H  
HETATM  119  H63 UNL     1      -1.797  -4.607  -0.810  1.00  0.00           H  
HETATM  120  H64 UNL     1      -4.017  -5.356  -0.789  1.00  0.00           H  
HETATM  121  H65 UNL     1      -4.338  -4.931  -2.480  1.00  0.00           H  
HETATM  122  H66 UNL     1      -3.694  -7.332  -2.383  1.00  0.00           H  
HETATM  123  H67 UNL     1      -2.321  -6.972  -1.336  1.00  0.00           H  
HETATM  124  H68 UNL     1      -2.783  -6.360  -4.258  1.00  0.00           H  
HETATM  125  H69 UNL     1      -1.380  -5.640  -3.508  1.00  0.00           H  
HETATM  126  H70 UNL     1      -1.021  -8.268  -2.721  1.00  0.00           H  
HETATM  127  H71 UNL     1      -2.233  -8.593  -3.955  1.00  0.00           H  
HETATM  128  H72 UNL     1      -0.788  -7.488  -5.724  1.00  0.00           H  
HETATM  129  H73 UNL     1      -0.219  -9.002  -5.041  1.00  0.00           H  
HETATM  130  H74 UNL     1       1.494  -7.899  -3.713  1.00  0.00           H  
HETATM  131  H75 UNL     1       1.508  -7.503  -5.504  1.00  0.00           H  
HETATM  132  H76 UNL     1       0.700  -5.658  -3.161  1.00  0.00           H  
HETATM  133  H77 UNL     1       0.605  -5.256  -4.934  1.00  0.00           H  
HETATM  134  H78 UNL     1       3.014  -5.734  -5.141  1.00  0.00           H  
HETATM  135  H79 UNL     1       2.625  -4.411  -3.988  1.00  0.00           H  
HETATM  136  H80 UNL     1       3.322  -7.331  -3.343  1.00  0.00           H  
HETATM  137  H81 UNL     1       5.195  -5.835  -4.199  1.00  0.00           H  
HETATM  138  H82 UNL     1       4.773  -4.677  -2.868  1.00  0.00           H  
HETATM  139  H83 UNL     1       5.380  -6.267  -2.416  1.00  0.00           H  
HETATM  140  H84 UNL     1       1.835  -6.551  -1.571  1.00  0.00           H  
HETATM  141  H85 UNL     1       3.544  -6.648  -1.056  1.00  0.00           H  
HETATM  142  H86 UNL     1       3.841  -4.423  -0.744  1.00  0.00           H  
HETATM  143  H87 UNL     1       2.740  -3.908  -2.023  1.00  0.00           H  
HETATM  144  H88 UNL     1       2.079  -4.472  -0.462  1.00  0.00           H  
CONECT    1    2   57   58   59
CONECT    2    3   60   61
CONECT    3    4   62   63
CONECT    4    5   64   65
CONECT    5    6   66   67
CONECT    6    7    8   68
CONECT    7   69
CONECT    8    9    9   70
CONECT    9   10   71
CONECT   10   11   16   72
CONECT   11   12   13   73
CONECT   12   74
CONECT   13   14   75   76
CONECT   14   15   16   77
CONECT   15   78
CONECT   16   17   79
CONECT   17   18   80   81
CONECT   18   19   19   82
CONECT   19   20   83
CONECT   20   21   84   85
CONECT   21   22   86   87
CONECT   22   23   88   89
CONECT   23   24   24   25
CONECT   25   26
CONECT   26   27   29   90
CONECT   27   28   91   92
CONECT   28   93
CONECT   29   30   94   95
CONECT   30   31
CONECT   31   32   32   33
CONECT   33   34   96   97
CONECT   34   35   98   99
CONECT   35   36  100  101
CONECT   36   37  102  103
CONECT   37   38  104  105
CONECT   38   39  106  107
CONECT   39   40  108  109
CONECT   40   41  110  111
CONECT   41   42  112  113
CONECT   42   43  114  115
CONECT   43   44  116  117
CONECT   44   45  118  119
CONECT   45   46  120  121
CONECT   46   47  122  123
CONECT   47   48  124  125
CONECT   48   49  126  127
CONECT   49   50  128  129
CONECT   50   51  130  131
CONECT   51   52  132  133
CONECT   52   53  134  135
CONECT   53   54   55  136
CONECT   54  137  138  139
CONECT   55   56  140  141
CONECT   56  142  143  144
END

HMDB0298162
     RDKit          3D
DG(a-25:0/PGF2alpha/0:0)
144144  0  0  0  0  0  0  0  0999 V2000
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M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
(2S)-2-{[(5E)-7-[(1R,2R,3R,5S)-3,5-dihydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]cyclopentyl]hept-5-enoyl]oxy}-3-hydroxypropyl 22-methyltetracosanoic acid	Generator

Chemical Formula

C₄₈H₈₈O₈

Average Molecular Weight

793.224

Monoisotopic Molecular Weight

792.647919794

IUPAC Name

(2S)-2-{[(5E)-7-[(1R,2R,3R,5S)-3,5-dihydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]cyclopentyl]hept-5-enoyl]oxy}-3-hydroxypropyl 22-methyltetracosanoate

Traditional Name

(2S)-2-{[(5E)-7-[(1R,2R,3R,5S)-3,5-dihydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]cyclopentyl]hept-5-enoyl]oxy}-3-hydroxypropyl 22-methyltetracosanoate

CAS Registry Number

Not Available

SMILES

CCCCC[C@H](O)\C=C\[C@H]1[C@H](O)C[C@H](O)[C@@H]1C\C=C\CCCC(=O)O[C@@H](CO)COC(=O)CCCCCCCCCCCCCCCCCCCCC(C)CC

InChI Identifier

InChI=1S/C48H88O8/c1-4-6-25-31-41(50)35-36-44-43(45(51)37-46(44)52)32-27-23-24-29-34-48(54)56-42(38-49)39-55-47(53)33-28-22-20-18-16-14-12-10-8-7-9-11-13-15-17-19-21-26-30-40(3)5-2/h23,27,35-36,40-46,49-52H,4-22,24-26,28-34,37-39H2,1-3H3/b27-23+,36-35+/t40?,41-,42-,43+,44+,45-,46+/m0/s1

InChI Key

LAUZWAYHHFODDE-LJPSCIMJSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as prostaglandins and related compounds. These are unsaturated carboxylic acids consisting of a 20 carbon skeleton that also contains a five member ring, and are based upon the fatty acid arachidonic acid.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Eicosanoids

Direct Parent

Prostaglandins and related compounds

Alternative Parents

Substituents

Prostaglandin skeleton
Diradylglycerol
Diacylglycerol
1,2-acyl-sn-glycerol
Fatty alcohol
Glycerolipid
Fatty acid ester
Dicarboxylic acid or derivatives
Cyclopentanol
Cyclic alcohol
Secondary alcohol
Carboxylic acid ester
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic homomonocyclic compound

Molecular Framework

Aliphatic homomonocyclic compounds

External Descriptors

Not Available

Ontology

Not Available

Endogenous (HMDB: HMDB0298162)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	9.04	ALOGPS
logP	12.2	ChemAxon
logS	-6.8	ALOGPS
pKa (Strongest Acidic)	14.24	ChemAxon
pKa (Strongest Basic)	-1.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	133.52 Å²	ChemAxon
Rotatable Bond Count	40	ChemAxon
Refractivity	232.44 m³·mol⁻¹	ChemAxon
Polarizability	101.28 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
AllCCS	[M+H]+	295.302	32859911
AllCCS	[M+H-H2O]+	295.28	32859911
AllCCS	[M+Na]+	295.283	32859911
AllCCS	[M+NH4]+	295.292	32859911
AllCCS	[M-H]-	282.632	32859911
AllCCS	[M+Na-2H]-	288.571	32859911
AllCCS	[M+HCOO]-	295.119	32859911
DeepCCS	[M+H]+	296.899	30932474
DeepCCS	[M-H]-	295.003	30932474
DeepCCS	[M-2H]-	328.989	30932474
DeepCCS	[M+Na]+	302.883	30932474

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Predicted by Siyang on May 30, 2022	34.3095 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	1.16 minutes	32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	5975.6 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	410.7 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	387.1 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	202.5 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	1093.8 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	1741.1 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	1317.1 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	193.1 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	3444.3 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	1181.6 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	3322.4 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	1159.7 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	808.3 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	334.6 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	546.3 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	10.3 seconds	40023050

Predicted Kovats Retention Indices

Not Available

Spectra

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(a-25:0/PGF2alpha/0:0) 10V, Positive-QTOF	splash10-014i-0000000090-a03a2d0b5c5e2e2a94ac	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(a-25:0/PGF2alpha/0:0) 20V, Positive-QTOF	splash10-014i-0000000090-a03a2d0b5c5e2e2a94ac	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(a-25:0/PGF2alpha/0:0) 40V, Positive-QTOF	splash10-03f0-0000900000-a83e094f96fd3ae6b6e2	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(a-25:0/PGF2alpha/0:0) 10V, Positive-QTOF	splash10-03di-0000000090-736e7c71f5a1b696d255	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(a-25:0/PGF2alpha/0:0) 20V, Positive-QTOF	splash10-03g0-0000900300-59b6e6087aa930163007	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(a-25:0/PGF2alpha/0:0) 40V, Positive-QTOF	splash10-03dr-0000900130-8e864a87a5db3e3df533	2021-10-21	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

157006269

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Not Available

Only showing the first 10 proteins. There are 132 proteins in total.

Show all enzymes and transporters

Enzymes

Enzyme Details

1. Diacylglycerol kinase theta

General function:: Involved in diacylglycerol kinase activity
Specific function:: Phosphorylates diacylglycerol (DAG) to generate phosphatidic acid (PA). May regulate the activity of protein kinase C by controlling the balance between these two signaling lipids. Activated in the nucleus in response to alpha-thrombin and nerve growth factor. May be involved in cAMP- induced activation of NR5A1 and subsequent steroidogenic gene transcription by delivering PA as ligand for NR5A1. Acts synergistically with NR5A1 on CYP17 transcriptional activity
Gene Name:: DGKQ
Uniprot ID:: P52824
Molecular weight:: 101154.0

Enzyme Details

2. Pancreatic triacylglycerol lipase

General function:: Involved in catalytic activity
Specific function:: Not Available
Gene Name:: PNLIP
Uniprot ID:: P16233
Molecular weight:: 51156.48

Enzyme Details

3. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1

General function:: Involved in calcium ion binding
Specific function:: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
Gene Name:: PLCB1
Uniprot ID:: Q9NQ66
Molecular weight:: 138565.805

Enzyme Details

4. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4

General function:: Involved in calcium ion binding
Specific function:: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. This form has a role in retina signal transduction.
Gene Name:: PLCB4
Uniprot ID:: Q15147
Molecular weight:: 136105.065

Enzyme Details

5. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-2

General function:: Involved in calcium ion binding
Specific function:: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
Gene Name:: PLCB2
Uniprot ID:: Q00722
Molecular weight:: 134023.21

Enzyme Details

6. Diacylglycerol kinase gamma

General function:: Involved in diacylglycerol kinase activity
Specific function:: Reverses the normal flow of glycerolipid biosynthesis by phosphorylating diacylglycerol back to phosphatidic acid
Gene Name:: DGKG
Uniprot ID:: P49619
Molecular weight:: 89095.3

Enzyme Details

7. Hepatic triacylglycerol lipase

General function:: Involved in catalytic activity
Specific function:: Hepatic lipase has the capacity to catalyze hydrolysis of phospholipids, mono-, di-, and triglycerides, and acyl-CoA thioesters. It is an important enzyme in HDL metabolism. Hepatic lipase binds heparin.
Gene Name:: LIPC
Uniprot ID:: P11150
Molecular weight:: 55914.1

Enzyme Details

8. Lysosomal acid lipase/cholesteryl ester hydrolase

General function:: Involved in lipid metabolic process
Specific function:: Crucial for the intracellular hydrolysis of cholesteryl esters and triglycerides that have been internalized via receptor-mediated endocytosis of lipoprotein particles. Important in mediating the effect of LDL (low density lipoprotein) uptake on suppression of hydroxymethylglutaryl-CoA reductase and activation of endogenous cellular cholesteryl ester formation.
Gene Name:: LIPA
Uniprot ID:: P38571
Molecular weight:: 45418.71

Enzyme Details

9. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3

General function:: Involved in calcium ion binding
Specific function:: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
Gene Name:: PLCB3
Uniprot ID:: Q01970
Molecular weight:: 138797.725

Enzyme Details

10. Inactive pancreatic lipase-related protein 1

General function:: Involved in catalytic activity
Specific function:: May function as inhibitor of dietary triglyceride digestion. Lacks detectable lipase activity towards triglycerides, diglycerides, phosphatidylcholine, galactolipids or cholesterol esters (in vitro) (By similarity).
Gene Name:: PNLIPRP1
Uniprot ID:: P54315
Molecular weight:: Not Available

Transporters

Enzyme Details

1. Long-chain fatty acid transport protein 1

General function:: Lipid transport and metabolism
Specific function:: Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. The LFCA import appears to be hormone-regulated in a tissue-specific manner. In adipocytes, but not myocytes, insulin induces a rapid translocation of FATP1 from intracellular compartments to the plasma membrane, paralleled by increased LFCA uptake. May act directly as a bona fide transporter, or alternatively, in a cytoplasmic or membrane- associated multimeric protein complex to trap and draw fatty acids towards accumulation. Plays a pivotal role in regulating available LFCA substrates from exogenous sources in tissues undergoing high levels of beta-oxidation or triglyceride synthesis. May be involved in regulation of cholesterol metabolism. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids
Gene Name:: SLC27A1
Uniprot ID:: Q6PCB7
Molecular weight:: 71107.5

Only showing the first 10 proteins. There are 132 proteins in total.

Show all enzymes and transporters

Showing metabocard for DG(a-25:0/PGF2alpha/0:0) (HMDB0298162)

MOL for HMDB0298162 (DG(a-25:0/PGF2alpha/0:0))

3D MOL for HMDB0298162 (DG(a-25:0/PGF2alpha/0:0))

3D SDF for HMDB0298162 (DG(a-25:0/PGF2alpha/0:0))

3D-SDF for HMDB0298162 (DG(a-25:0/PGF2alpha/0:0))

PDB for HMDB0298162 (DG(a-25:0/PGF2alpha/0:0))

3D PDB for HMDB0298162 (DG(a-25:0/PGF2alpha/0:0))

SMILES for HMDB0298162 (DG(a-25:0/PGF2alpha/0:0))

INCHI for HMDB0298162 (DG(a-25:0/PGF2alpha/0:0))

Structure for HMDB0298162 (DG(a-25:0/PGF2alpha/0:0))

3D Structure for HMDB0298162 (DG(a-25:0/PGF2alpha/0:0))

Predicted Collision Cross Sections

Predicted Retention Times

Underivatized

Predicted Kovats Retention Indices

MS/MS Spectra

Enzymes

Transporters