Hmdb loader

Showing metabocard for DG(a-25:0/0:0/22:6(4Z,7Z,10Z,13E,15E,19Z)-OH(17)) (HMDB0298268)

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IdentificationTaxonomyOntologyPhysical propertiesSpectraBiological propertiesConcentrationsLinksReferencesenzymes (131)transporters (1) Show 132 proteinsXML
enzymes (131)transporters (1) Show 132 proteins
Record Information
Version5.0
StatusPredicted
Creation Date2021-09-19 14:54:43 UTC
Update Date2022-11-30 20:10:41 UTC
HMDB IDHMDB0298268
Secondary Accession NumbersNone
Metabolite Identification
Common NameDG(a-25:0/0:0/22:6(4Z,7Z,10Z,13E,15E,19Z)-OH(17))
DescriptionDG(a-25:0/0:0/22:6(4Z,7Z,10Z,13E,15E,19Z)-OH(17)) belongs to the family of Diacylglycerols. These are glycerolipids lipids containing a common glycerol backbone to which at least one fatty acyl group is esterified. It is involved in the phospholipid metabolic pathway.
Structure
Thumb
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0298268 (DG(a-25:0/0:0/22:6(4Z,7Z,10Z,13E,15E,19Z)-OH(17)))

DG(a-25:0/0:0/22:6(4Z,7Z,10Z,13E,15E,19Z)-OH(17))
  Mrv1652309192116552D          

 56 55  0  0  1  0            999 V2000
   24.1444   -6.4801    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.1832   -7.0352    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   22.2217   -6.4803    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.1443   -5.3701    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.2603   -7.0352    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.1828   -8.1454    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.5458   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.5458   -5.8512    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.8317   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.1176   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.4035   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.6894   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.9753   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.2612   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.5471   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.8329   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.1188   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.4047   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.6906   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.9764   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2623   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5482   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8341   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1200   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    7.6918   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9777   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2635   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5494   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8353   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8353   -7.4476    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1212   -7.0345    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.4298   -4.9576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.4298   -4.1862    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   22.7157   -5.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.0016   -4.9576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.2875   -5.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   19.0343   -5.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.2093   -5.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   16.7810   -5.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.9560   -5.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.2419   -4.9576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.5278   -5.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.8137   -4.9576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.0996   -5.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.3855   -4.9576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.6714   -5.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.6714   -6.1421    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.9572   -4.9576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2431   -5.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  2  1  1  0  0  0  0
  2  6  1  6  0  0  0
  3  2  1  0  0  0  0
  4  1  1  0  0  0  0
  4 33  1  0  0  0  0
  5  3  1  0  0  0  0
  7  5  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
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 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
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 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
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 29 31  1  0  0  0  0
 31 32  1  0  0  0  0
 33 34  2  0  0  0  0
 33 35  1  0  0  0  0
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 36 37  1  0  0  0  0
 37 38  2  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  2  0  0  0  0
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 50 52  1  0  0  0  0
 52 53  1  0  0  0  0
 53 54  2  0  0  0  0
 54 55  1  0  0  0  0
 55 56  1  0  0  0  0
M  END
Download

3D MOL for HMDB0298268 (DG(a-25:0/0:0/22:6(4Z,7Z,10Z,13E,15E,19Z)-OH(17)))

HMDB0298268
     RDKit          3D
DG(a-25:0/0:0/22:6(4Z,7Z,10Z,13E,15E,19Z)-OH(17))
142141  0  0  0  0  0  0  0  0999 V2000
    7.2157    2.5478    1.6114 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5156    3.6912    0.8577 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4637    3.0774    0.0379 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1810    3.3619    0.1191 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5806    4.3581    1.0464 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8155    5.4221    0.2007 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8370    4.7343   -0.4865 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8590    6.0442   -0.6150 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4064    5.5335   -1.7149 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9594    5.0487   -2.8010 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5543    3.8629   -3.3200 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9687    3.1228   -4.4357 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0354    3.4911   -5.3459 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1152    2.7110   -5.4098 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3699    1.4971   -4.6284 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4676    0.2728   -5.4338 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7398   -0.8199   -5.2477 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7298   -0.8850   -4.1610 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9905   -1.9175   -3.1395 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1198   -2.8345   -2.8471 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7983   -3.0508   -3.4151 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6225   -2.8433   -2.5315 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5982   -3.6119   -1.2691 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6008   -4.3467   -0.9496 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5468   -3.5871   -0.3967 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4500   -4.2466    0.8413 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0906   -4.1573    1.4467 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.8698   -4.6776    0.5196 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3740   -2.9271    2.0816 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6405   -1.7971    1.3181 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2109   -0.8746    0.8252 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4394   -1.0209    1.1225 O   0  0  0  0  0  0  0  0  0  0  0  0
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    0.0722    2.1695    1.6595 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0419    1.3216    2.8730 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6362    2.1497    4.0204 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9690    1.2936    5.2386 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.1130    0.7949    4.0645 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9530   -0.2629    3.4275 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6246   -1.2624    4.2800 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3206   -2.3230    3.3283 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2425   -3.0623    2.6927 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3587   -4.0720    1.6604 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1923   -5.2460    1.7620 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6491   -5.2776    1.7801 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4714   -4.9112    0.6413 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.1252    2.0516    1.1581 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1525    2.8976    2.0708 H   0  0  0  0  0  0  0  0  0  0  0  0
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    5.8078    2.3150   -0.7089 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5271    2.7854   -0.5489 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3748    4.9160    1.5365 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8903    3.9022    1.7553 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3503    6.1631    0.8917 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1227    5.3377   -0.8349 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2283    6.9699   -0.3433 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1763    6.6975   -1.7398 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7821    5.4508   -3.4438 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7150    3.4321   -2.7175 H   0  0  0  0  0  0  0  0  0  0  0  0
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    5.9543    4.3824   -5.9622 H   0  0  0  0  0  0  0  0  0  0  0  0
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    6.8874   -1.6842   -5.9253 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5247    0.0742   -3.6808 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7729   -1.1763   -4.7112 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9584   -1.9145   -2.6079 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4212   -3.5612   -2.0566 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7985   -4.1719   -3.7105 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5805   -2.5634   -4.3848 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6043   -1.7461   -2.2812 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6602   -3.0363   -3.0976 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7498   -5.3223    0.7707 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1691   -3.7993    1.5965 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1227   -4.9408    2.2983 H   0  0  0  0  0  0  0  0  0  0  0  0
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    0.4774   -2.5778    2.7814 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.0238    0.1068   -1.1034 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7220    1.4226    0.4978 H   0  0  0  0  0  0  0  0  0  0  0  0
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    0.9096    0.8547    3.1376 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.8461   -5.9611    2.5922 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9025   -5.9082    0.8424 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.9340   -6.3704    2.0419 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2706   -5.7131   -0.2218 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5791   -5.2997    0.8287 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4209   -3.6525   -0.8131 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2900   -2.9363    0.7847 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8637   -3.1101   -1.1232 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0724   -2.1722    0.4042 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9147   -2.0406   -1.9575 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1275   -1.1203   -0.4730 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8960    0.2232   -2.3046 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6081   -0.9967   -2.2998 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.4555    1.7566    2.1902 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5129    3.0912    1.0338 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

3D SDF for HMDB0298268 (DG(a-25:0/0:0/22:6(4Z,7Z,10Z,13E,15E,19Z)-OH(17)))

DG(a-25:0/0:0/22:6(4Z,7Z,10Z,13E,15E,19Z)-OH(17))
  Mrv1652309192116552D          

 56 55  0  0  1  0            999 V2000
   24.1444   -6.4801    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.1832   -7.0352    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   22.2217   -6.4803    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.1443   -5.3701    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.2603   -7.0352    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.1828   -8.1454    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.5458   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.5458   -5.8512    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.8317   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.1176   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.4035   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.6894   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.9753   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.2612   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.5471   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.8329   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.1188   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.4047   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.6906   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.9764   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2623   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5482   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8341   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1200   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4059   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6918   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9777   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2635   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5494   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8353   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8353   -7.4476    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1212   -7.0345    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.4298   -4.9576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.4298   -4.1862    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   22.7157   -5.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.0016   -4.9576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.2875   -5.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   19.7484   -4.9576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.0343   -5.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.2093   -5.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.4951   -4.9576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.7810   -5.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   15.2419   -4.9576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.5278   -5.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.8137   -4.9576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   12.3855   -4.9576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   11.6714   -6.1421    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.9572   -4.9576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2431   -5.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4181   -5.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7040   -4.9576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9899   -5.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  2  6  1  6  0  0  0
  3  2  1  0  0  0  0
  4  1  1  0  0  0  0
  4 33  1  0  0  0  0
  5  3  1  0  0  0  0
  7  5  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
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 17 18  1  0  0  0  0
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 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 29 31  1  0  0  0  0
 31 32  1  0  0  0  0
 33 34  2  0  0  0  0
 33 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  2  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  2  0  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  2  0  0  0  0
 44 45  1  0  0  0  0
 45 46  1  0  0  0  0
 46 47  2  0  0  0  0
 47 48  1  0  0  0  0
 48 49  2  0  0  0  0
 49 50  1  0  0  0  0
 50 51  1  0  0  0  0
 50 52  1  0  0  0  0
 52 53  1  0  0  0  0
 53 54  2  0  0  0  0
 54 55  1  0  0  0  0
 55 56  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0298268

> <DATABASE_NAME>
hmdb

> <SMILES>
CC\C=C/CC(O)\C=C\C=C\C\C=C/C\C=C/C\C=C/CCC(=O)OC[C@H](O)COC(=O)CCCCCCCCCCCCCCCCCCCCC(C)CC

> <INCHI_IDENTIFIER>
InChI=1S/C50H86O6/c1-4-6-34-40-47(51)41-36-31-27-23-19-15-13-17-21-25-29-33-38-43-50(54)56-45-48(52)44-55-49(53)42-37-32-28-24-20-16-12-10-8-7-9-11-14-18-22-26-30-35-39-46(3)5-2/h6,15,17,19,21,27,29,31,33-34,36,41,46-48,51-52H,4-5,7-14,16,18,20,22-26,28,30,32,35,37-40,42-45H2,1-3H3/b19-15-,21-17-,31-27+,33-29-,34-6-,41-36+/t46?,47?,48-/m1/s1

> <INCHI_KEY>
GFTAHLZUPAFKNU-ANADESMPSA-N

> <FORMULA>
C50H86O6

> <MOLECULAR_WEIGHT>
783.232

> <EXACT_MASS>
782.642440489

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
142

> <JCHEM_AVERAGE_POLARIZABILITY>
99.92339208817012

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R)-2-hydroxy-3-{[(4Z,7Z,10Z,13E,15E,19Z)-17-hydroxydocosa-4,7,10,13,15,19-hexaenoyl]oxy}propyl 22-methyltetracosanoate

> <ALOGPS_LOGP>
10.41

> <JCHEM_LOGP>
15.111733181333332

> <ALOGPS_LOGS>
-7.56

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
17.720826441407528

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.631221203133645

> <JCHEM_PKA_STRONGEST_BASIC>
-1.6087072991158573

> <JCHEM_POLAR_SURFACE_AREA>
93.06

> <JCHEM_REFRACTIVITY>
244.87660000000005

> <JCHEM_ROTATABLE_BOND_COUNT>
42

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.16e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2R)-2-hydroxy-3-{[(4Z,7Z,10Z,13E,15E,19Z)-17-hydroxydocosa-4,7,10,13,15,19-hexaenoyl]oxy}propyl 22-methyltetracosanoate

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0298268 (DG(a-25:0/0:0/22:6(4Z,7Z,10Z,13E,15E,19Z)-OH(17)))

HMDB0298268
     RDKit          3D
DG(a-25:0/0:0/22:6(4Z,7Z,10Z,13E,15E,19Z)-OH(17))
142141  0  0  0  0  0  0  0  0999 V2000
    7.2157    2.5478    1.6114 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5156    3.6912    0.8577 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4637    3.0774    0.0379 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1810    3.3619    0.1191 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5806    4.3581    1.0464 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8155    5.4221    0.2007 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8370    4.7343   -0.4865 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8590    6.0442   -0.6150 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4064    5.5335   -1.7149 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9594    5.0487   -2.8010 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5543    3.8629   -3.3200 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9687    3.1228   -4.4357 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0354    3.4911   -5.3459 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1152    2.7110   -5.4098 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3699    1.4971   -4.6284 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4676    0.2728   -5.4338 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

PDB for HMDB0298268 (DG(a-25:0/0:0/22:6(4Z,7Z,10Z,13E,15E,19Z)-OH(17)))

HEADER    PROTEIN                                 19-SEP-21   NONE
TITLE     NULL                                                        
COMPND    MOLECULE: DG(a-25:0/0:0/22:6(4Z,7Z,10Z,13E,15E,19Z)-OH(17)) 
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   19-SEP-21         0                                  
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HETATM   34  O   UNK     0      43.736  -7.814   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0      42.403 -10.025   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      41.070  -9.254   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      39.737 -10.025   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      38.197 -10.025   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      36.864  -9.254   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      35.531 -10.025   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      33.991 -10.025   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      32.658  -9.254   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      31.325 -10.025   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      29.785 -10.025   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      28.452  -9.254   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      27.119 -10.025   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      25.785  -9.254   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      24.453 -10.025   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      23.120  -9.254   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      21.787 -10.025   0.000  0.00  0.00           C+0
HETATM   51  O   UNK     0      21.787 -11.465   0.000  0.00  0.00           O+0
HETATM   52  C   UNK     0      20.453  -9.254   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      19.120 -10.025   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      17.580 -10.025   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0      16.247  -9.254   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0      14.914 -10.025   0.000  0.00  0.00           C+0
CONECT    1    2    4                                                       
CONECT    2    1    6    3                                                  
CONECT    3    2    5                                                       
CONECT    4    1   33                                                       
CONECT    5    3    7                                                       
CONECT    6    2                                                            
CONECT    7    5    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   32                                                       
CONECT   32   31                                                            
CONECT   33    4   34   35                                                  
CONECT   34   33                                                            
CONECT   35   33   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40   42                                                       
CONECT   42   41   43                                                       
CONECT   43   42   44                                                       
CONECT   44   43   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   50                                                       
CONECT   50   49   51   52                                                  
CONECT   51   50                                                            
CONECT   52   50   53                                                       
CONECT   53   52   54                                                       
CONECT   54   53   55                                                       
CONECT   55   54   56                                                       
CONECT   56   55                                                            
MASTER        0    0    0    0    0    0    0    0   56    0  110    0
END
Download

3D PDB for HMDB0298268 (DG(a-25:0/0:0/22:6(4Z,7Z,10Z,13E,15E,19Z)-OH(17)))

COMPND    HMDB0298268
HETATM    1  C1  UNL     1       7.216   2.548   1.611  1.00  0.00           C  
HETATM    2  C2  UNL     1       6.516   3.691   0.858  1.00  0.00           C  
HETATM    3  C3  UNL     1       5.464   3.077   0.038  1.00  0.00           C  
HETATM    4  C4  UNL     1       4.181   3.362   0.119  1.00  0.00           C  
HETATM    5  C5  UNL     1       3.581   4.358   1.046  1.00  0.00           C  
HETATM    6  C6  UNL     1       2.816   5.422   0.201  1.00  0.00           C  
HETATM    7  O1  UNL     1       1.837   4.734  -0.486  1.00  0.00           O  
HETATM    8  C7  UNL     1       3.859   6.044  -0.615  1.00  0.00           C  
HETATM    9  C8  UNL     1       4.406   5.534  -1.715  1.00  0.00           C  
HETATM   10  C9  UNL     1       4.959   5.049  -2.801  1.00  0.00           C  
HETATM   11  C10 UNL     1       4.554   3.863  -3.320  1.00  0.00           C  
HETATM   12  C11 UNL     1       4.969   3.123  -4.436  1.00  0.00           C  
HETATM   13  C12 UNL     1       6.035   3.491  -5.346  1.00  0.00           C  
HETATM   14  C13 UNL     1       7.115   2.711  -5.410  1.00  0.00           C  
HETATM   15  C14 UNL     1       7.370   1.497  -4.628  1.00  0.00           C  
HETATM   16  C15 UNL     1       7.468   0.273  -5.434  1.00  0.00           C  
HETATM   17  C16 UNL     1       6.740  -0.820  -5.248  1.00  0.00           C  
HETATM   18  C17 UNL     1       5.730  -0.885  -4.161  1.00  0.00           C  
HETATM   19  C18 UNL     1       5.990  -1.918  -3.140  1.00  0.00           C  
HETATM   20  C19 UNL     1       5.120  -2.835  -2.847  1.00  0.00           C  
HETATM   21  C20 UNL     1       3.798  -3.051  -3.415  1.00  0.00           C  
HETATM   22  C21 UNL     1       2.623  -2.843  -2.532  1.00  0.00           C  
HETATM   23  C22 UNL     1       2.598  -3.612  -1.269  1.00  0.00           C  
HETATM   24  O2  UNL     1       3.601  -4.347  -0.950  1.00  0.00           O  
HETATM   25  O3  UNL     1       1.547  -3.587  -0.397  1.00  0.00           O  
HETATM   26  C23 UNL     1       1.450  -4.247   0.841  1.00  0.00           C  
HETATM   27  C24 UNL     1       0.091  -4.157   1.447  1.00  0.00           C  
HETATM   28  O4  UNL     1      -0.870  -4.678   0.520  1.00  0.00           O  
HETATM   29  C25 UNL     1      -0.374  -2.927   2.082  1.00  0.00           C  
HETATM   30  O5  UNL     1      -0.641  -1.797   1.318  1.00  0.00           O  
HETATM   31  C26 UNL     1       0.211  -0.875   0.825  1.00  0.00           C  
HETATM   32  O6  UNL     1       1.439  -1.021   1.122  1.00  0.00           O  
HETATM   33  C27 UNL     1      -0.090   0.300  -0.029  1.00  0.00           C  
HETATM   34  C28 UNL     1       0.607   1.561   0.423  1.00  0.00           C  
HETATM   35  C29 UNL     1       0.072   2.169   1.660  1.00  0.00           C  
HETATM   36  C30 UNL     1      -0.042   1.322   2.873  1.00  0.00           C  
HETATM   37  C31 UNL     1      -0.636   2.150   4.020  1.00  0.00           C  
HETATM   38  C32 UNL     1      -0.969   1.294   5.239  1.00  0.00           C  
HETATM   39  C33 UNL     1      -1.924   0.195   4.766  1.00  0.00           C  
HETATM   40  C34 UNL     1      -3.113   0.795   4.065  1.00  0.00           C  
HETATM   41  C35 UNL     1      -3.953  -0.263   3.427  1.00  0.00           C  
HETATM   42  C36 UNL     1      -4.625  -1.262   4.280  1.00  0.00           C  
HETATM   43  C37 UNL     1      -5.321  -2.323   3.328  1.00  0.00           C  
HETATM   44  C38 UNL     1      -4.242  -3.062   2.693  1.00  0.00           C  
HETATM   45  C39 UNL     1      -4.359  -4.072   1.660  1.00  0.00           C  
HETATM   46  C40 UNL     1      -5.192  -5.246   1.762  1.00  0.00           C  
HETATM   47  C41 UNL     1      -6.649  -5.278   1.780  1.00  0.00           C  
HETATM   48  C42 UNL     1      -7.471  -4.911   0.641  1.00  0.00           C  
HETATM   49  C43 UNL     1      -7.644  -3.611   0.077  1.00  0.00           C  
HETATM   50  C44 UNL     1      -6.605  -2.701  -0.432  1.00  0.00           C  
HETATM   51  C45 UNL     1      -7.349  -1.539  -1.141  1.00  0.00           C  
HETATM   52  C46 UNL     1      -6.396  -0.533  -1.645  1.00  0.00           C  
HETATM   53  C47 UNL     1      -5.655   0.270  -0.602  1.00  0.00           C  
HETATM   54  C48 UNL     1      -4.686   1.233  -1.259  1.00  0.00           C  
HETATM   55  C49 UNL     1      -6.711   1.177   0.117  1.00  0.00           C  
HETATM   56  C50 UNL     1      -6.125   2.052   1.158  1.00  0.00           C  
HETATM   57  H1  UNL     1       8.153   2.898   2.071  1.00  0.00           H  
HETATM   58  H2  UNL     1       7.444   1.732   0.912  1.00  0.00           H  
HETATM   59  H3  UNL     1       6.543   2.218   2.439  1.00  0.00           H  
HETATM   60  H4  UNL     1       7.216   4.258   0.237  1.00  0.00           H  
HETATM   61  H5  UNL     1       6.137   4.411   1.626  1.00  0.00           H  
HETATM   62  H6  UNL     1       5.808   2.315  -0.709  1.00  0.00           H  
HETATM   63  H7  UNL     1       3.527   2.785  -0.549  1.00  0.00           H  
HETATM   64  H8  UNL     1       4.375   4.916   1.536  1.00  0.00           H  
HETATM   65  H9  UNL     1       2.890   3.902   1.755  1.00  0.00           H  
HETATM   66  H10 UNL     1       2.350   6.163   0.892  1.00  0.00           H  
HETATM   67  H11 UNL     1       1.123   5.338  -0.835  1.00  0.00           H  
HETATM   68  H12 UNL     1       4.228   6.970  -0.343  1.00  0.00           H  
HETATM   69  H13 UNL     1       5.176   6.697  -1.740  1.00  0.00           H  
HETATM   70  H14 UNL     1       5.782   5.451  -3.444  1.00  0.00           H  
HETATM   71  H15 UNL     1       3.715   3.432  -2.718  1.00  0.00           H  
HETATM   72  H16 UNL     1       4.936   2.034  -4.180  1.00  0.00           H  
HETATM   73  H17 UNL     1       3.981   3.112  -5.158  1.00  0.00           H  
HETATM   74  H18 UNL     1       5.954   4.382  -5.962  1.00  0.00           H  
HETATM   75  H19 UNL     1       7.878   3.055  -6.156  1.00  0.00           H  
HETATM   76  H20 UNL     1       6.731   1.368  -3.767  1.00  0.00           H  
HETATM   77  H21 UNL     1       8.417   1.683  -4.143  1.00  0.00           H  
HETATM   78  H22 UNL     1       8.183   0.194  -6.280  1.00  0.00           H  
HETATM   79  H23 UNL     1       6.887  -1.684  -5.925  1.00  0.00           H  
HETATM   80  H24 UNL     1       5.525   0.074  -3.681  1.00  0.00           H  
HETATM   81  H25 UNL     1       4.773  -1.176  -4.711  1.00  0.00           H  
HETATM   82  H26 UNL     1       6.958  -1.914  -2.608  1.00  0.00           H  
HETATM   83  H27 UNL     1       5.421  -3.561  -2.057  1.00  0.00           H  
HETATM   84  H28 UNL     1       3.799  -4.172  -3.710  1.00  0.00           H  
HETATM   85  H29 UNL     1       3.581  -2.563  -4.385  1.00  0.00           H  
HETATM   86  H30 UNL     1       2.604  -1.746  -2.281  1.00  0.00           H  
HETATM   87  H31 UNL     1       1.660  -3.036  -3.098  1.00  0.00           H  
HETATM   88  H32 UNL     1       1.750  -5.322   0.771  1.00  0.00           H  
HETATM   89  H33 UNL     1       2.169  -3.799   1.596  1.00  0.00           H  
HETATM   90  H34 UNL     1       0.123  -4.941   2.298  1.00  0.00           H  
HETATM   91  H35 UNL     1      -1.217  -5.493   0.924  1.00  0.00           H  
HETATM   92  H36 UNL     1       0.477  -2.578   2.781  1.00  0.00           H  
HETATM   93  H37 UNL     1      -1.235  -3.112   2.778  1.00  0.00           H  
HETATM   94  H38 UNL     1      -1.184   0.519   0.202  1.00  0.00           H  
HETATM   95  H39 UNL     1      -0.024   0.107  -1.103  1.00  0.00           H  
HETATM   96  H40 UNL     1       1.722   1.423   0.498  1.00  0.00           H  
HETATM   97  H41 UNL     1       0.491   2.283  -0.447  1.00  0.00           H  
HETATM   98  H42 UNL     1       0.707   3.076   1.883  1.00  0.00           H  
HETATM   99  H43 UNL     1      -0.976   2.566   1.424  1.00  0.00           H  
HETATM  100  H44 UNL     1       0.910   0.855   3.138  1.00  0.00           H  
HETATM  101  H45 UNL     1      -0.739   0.474   2.677  1.00  0.00           H  
HETATM  102  H46 UNL     1       0.246   2.776   4.363  1.00  0.00           H  
HETATM  103  H47 UNL     1      -1.399   2.852   3.729  1.00  0.00           H  
HETATM  104  H48 UNL     1      -0.046   0.800   5.565  1.00  0.00           H  
HETATM  105  H49 UNL     1      -1.386   1.880   6.056  1.00  0.00           H  
HETATM  106  H50 UNL     1      -1.373  -0.561   4.225  1.00  0.00           H  
HETATM  107  H51 UNL     1      -2.321  -0.242   5.719  1.00  0.00           H  
HETATM  108  H52 UNL     1      -3.742   1.399   4.738  1.00  0.00           H  
HETATM  109  H53 UNL     1      -2.747   1.500   3.256  1.00  0.00           H  
HETATM  110  H54 UNL     1      -3.305  -0.669   2.617  1.00  0.00           H  
HETATM  111  H55 UNL     1      -4.761   0.286   2.833  1.00  0.00           H  
HETATM  112  H56 UNL     1      -4.031  -1.786   5.014  1.00  0.00           H  
HETATM  113  H57 UNL     1      -5.499  -0.782   4.774  1.00  0.00           H  
HETATM  114  H58 UNL     1      -5.964  -2.874   4.018  1.00  0.00           H  
HETATM  115  H59 UNL     1      -5.882  -1.652   2.652  1.00  0.00           H  
HETATM  116  H60 UNL     1      -3.430  -2.347   2.328  1.00  0.00           H  
HETATM  117  H61 UNL     1      -3.636  -3.540   3.590  1.00  0.00           H  
HETATM  118  H62 UNL     1      -3.254  -4.557   1.660  1.00  0.00           H  
HETATM  119  H63 UNL     1      -4.314  -3.695   0.601  1.00  0.00           H  
HETATM  120  H64 UNL     1      -4.846  -5.961   2.592  1.00  0.00           H  
HETATM  121  H65 UNL     1      -4.902  -5.908   0.842  1.00  0.00           H  
HETATM  122  H66 UNL     1      -7.072  -4.771   2.722  1.00  0.00           H  
HETATM  123  H67 UNL     1      -6.934  -6.370   2.042  1.00  0.00           H  
HETATM  124  H68 UNL     1      -7.271  -5.713  -0.222  1.00  0.00           H  
HETATM  125  H69 UNL     1      -8.579  -5.300   0.829  1.00  0.00           H  
HETATM  126  H70 UNL     1      -8.421  -3.653  -0.813  1.00  0.00           H  
HETATM  127  H71 UNL     1      -8.290  -2.936   0.785  1.00  0.00           H  
HETATM  128  H72 UNL     1      -5.864  -3.110  -1.123  1.00  0.00           H  
HETATM  129  H73 UNL     1      -6.072  -2.172   0.404  1.00  0.00           H  
HETATM  130  H74 UNL     1      -7.915  -2.041  -1.957  1.00  0.00           H  
HETATM  131  H75 UNL     1      -8.127  -1.120  -0.473  1.00  0.00           H  
HETATM  132  H76 UNL     1      -6.896   0.223  -2.305  1.00  0.00           H  
HETATM  133  H77 UNL     1      -5.608  -0.997  -2.300  1.00  0.00           H  
HETATM  134  H78 UNL     1      -5.209  -0.360   0.173  1.00  0.00           H  
HETATM  135  H79 UNL     1      -4.019   0.661  -1.976  1.00  0.00           H  
HETATM  136  H80 UNL     1      -5.193   2.074  -1.712  1.00  0.00           H  
HETATM  137  H81 UNL     1      -3.978   1.612  -0.468  1.00  0.00           H  
HETATM  138  H82 UNL     1      -7.196   1.778  -0.654  1.00  0.00           H  
HETATM  139  H83 UNL     1      -7.407   0.429   0.602  1.00  0.00           H  
HETATM  140  H84 UNL     1      -5.027   2.128   1.137  1.00  0.00           H  
HETATM  141  H85 UNL     1      -6.455   1.757   2.190  1.00  0.00           H  
HETATM  142  H86 UNL     1      -6.513   3.091   1.034  1.00  0.00           H  
CONECT    1    2   57   58   59
CONECT    2    3   60   61
CONECT    3    4    4   62
CONECT    4    5   63
CONECT    5    6   64   65
CONECT    6    7    8   66
CONECT    7   67
CONECT    8    9    9   68
CONECT    9   10   69
CONECT   10   11   11   70
CONECT   11   12   71
CONECT   12   13   72   73
CONECT   13   14   14   74
CONECT   14   15   75
CONECT   15   16   76   77
CONECT   16   17   17   78
CONECT   17   18   79
CONECT   18   19   80   81
CONECT   19   20   20   82
CONECT   20   21   83
CONECT   21   22   84   85
CONECT   22   23   86   87
CONECT   23   24   24   25
CONECT   25   26
CONECT   26   27   88   89
CONECT   27   28   29   90
CONECT   28   91
CONECT   29   30   92   93
CONECT   30   31
CONECT   31   32   32   33
CONECT   33   34   94   95
CONECT   34   35   96   97
CONECT   35   36   98   99
CONECT   36   37  100  101
CONECT   37   38  102  103
CONECT   38   39  104  105
CONECT   39   40  106  107
CONECT   40   41  108  109
CONECT   41   42  110  111
CONECT   42   43  112  113
CONECT   43   44  114  115
CONECT   44   45  116  117
CONECT   45   46  118  119
CONECT   46   47  120  121
CONECT   47   48  122  123
CONECT   48   49  124  125
CONECT   49   50  126  127
CONECT   50   51  128  129
CONECT   51   52  130  131
CONECT   52   53  132  133
CONECT   53   54   55  134
CONECT   54  135  136  137
CONECT   55   56  138  139
CONECT   56  140  141  142
END
Download

SMILES for HMDB0298268 (DG(a-25:0/0:0/22:6(4Z,7Z,10Z,13E,15E,19Z)-OH(17)))

CC\C=C/CC(O)\C=C\C=C\C\C=C/C\C=C/C\C=C/CCC(=O)OC[C@H](O)COC(=O)CCCCCCCCCCCCCCCCCCCCC(C)CC
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INCHI for HMDB0298268 (DG(a-25:0/0:0/22:6(4Z,7Z,10Z,13E,15E,19Z)-OH(17)))

InChI=1S/C50H86O6/c1-4-6-34-40-47(51)41-36-31-27-23-19-15-13-17-21-25-29-33-38-43-50(54)56-45-48(52)44-55-49(53)42-37-32-28-24-20-16-12-10-8-7-9-11-14-18-22-26-30-35-39-46(3)5-2/h6,15,17,19,21,27,29,31,33-34,36,41,46-48,51-52H,4-5,7-14,16,18,20,22-26,28,30,32,35,37-40,42-45H2,1-3H3/b19-15-,21-17-,31-27+,33-29-,34-6-,41-36+/t46?,47?,48-/m1/s1
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Synonyms
ValueSource
(2R)-2-Hydroxy-3-{[(4Z,7Z,10Z,13E,15E,19Z)-17-hydroxydocosa-4,7,10,13,15,19-hexaenoyl]oxy}propyl 22-methyltetracosanoic acidGenerator
Chemical FormulaC50H86O6
Average Molecular Weight783.232
Monoisotopic Molecular Weight782.642440489
IUPAC Name(2R)-2-hydroxy-3-{[(4Z,7Z,10Z,13E,15E,19Z)-17-hydroxydocosa-4,7,10,13,15,19-hexaenoyl]oxy}propyl 22-methyltetracosanoate
Traditional Name(2R)-2-hydroxy-3-{[(4Z,7Z,10Z,13E,15E,19Z)-17-hydroxydocosa-4,7,10,13,15,19-hexaenoyl]oxy}propyl 22-methyltetracosanoate
CAS Registry NumberNot Available
SMILES
CC\C=C/CC(O)\C=C\C=C\C\C=C/C\C=C/C\C=C/CCC(=O)OC[C@H](O)COC(=O)CCCCCCCCCCCCCCCCCCCCC(C)CC
InChI Identifier
InChI=1S/C50H86O6/c1-4-6-34-40-47(51)41-36-31-27-23-19-15-13-17-21-25-29-33-38-43-50(54)56-45-48(52)44-55-49(53)42-37-32-28-24-20-16-12-10-8-7-9-11-14-18-22-26-30-35-39-46(3)5-2/h6,15,17,19,21,27,29,31,33-34,36,41,46-48,51-52H,4-5,7-14,16,18,20,22-26,28,30,32,35,37-40,42-45H2,1-3H3/b19-15-,21-17-,31-27+,33-29-,34-6-,41-36+/t46?,47?,48-/m1/s1
InChI KeyGFTAHLZUPAFKNU-ANADESMPSA-N
Chemical Taxonomy
ClassificationNot classified
Ontology
Not AvailableNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP10.41ALOGPS
logP15.11ChemAxon
logS-7.6ALOGPS
pKa (Strongest Acidic)13.63ChemAxon
pKa (Strongest Basic)-1.6ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area93.06 ŲChemAxon
Rotatable Bond Count42ChemAxon
Refractivity244.88 m³·mol⁻¹ChemAxon
Polarizability99.92 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+289.58932859911
AllCCS[M+H-H2O]+289.44232859911
AllCCS[M+Na]+289.72632859911
AllCCS[M+NH4]+289.69932859911
AllCCS[M-H]-297.83532859911
AllCCS[M+Na-2H]-305.21732859911
AllCCS[M+HCOO]-313.29832859911
DeepCCS[M+H]+286.61130932474
DeepCCS[M-H]-284.78630932474
DeepCCS[M-2H]-318.0330932474
DeepCCS[M+Na]+292.21730932474

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Predicted by Siyang on May 30, 202247.7154 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20220.76 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid6481.6 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid933.5 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid454.9 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid462.3 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid1395.3 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid2306.1 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid1427.5 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)144.8 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid4678.0 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid1444.8 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid3682.1 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid1709.6 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid959.6 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate602.3 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA944.3 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water12.3 seconds40023050

Predicted Kovats Retention Indices

Not Available
Spectra
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available

Only showing the first 10 proteins. There are 132 proteins in total.

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Enzymes

Enzyme Details
1. Diacylglycerol kinase theta
General function:
Involved in diacylglycerol kinase activity
Specific function:
Phosphorylates diacylglycerol (DAG) to generate phosphatidic acid (PA). May regulate the activity of protein kinase C by controlling the balance between these two signaling lipids. Activated in the nucleus in response to alpha-thrombin and nerve growth factor. May be involved in cAMP- induced activation of NR5A1 and subsequent steroidogenic gene transcription by delivering PA as ligand for NR5A1. Acts synergistically with NR5A1 on CYP17 transcriptional activity
Gene Name:
DGKQ
Uniprot ID:
P52824
Molecular weight:
101154.0
Enzyme Details
2. Pancreatic triacylglycerol lipase
General function:
Involved in catalytic activity
Specific function:
Not Available
Gene Name:
PNLIP
Uniprot ID:
P16233
Molecular weight:
51156.48
Enzyme Details
3. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1
General function:
Involved in calcium ion binding
Specific function:
The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
Gene Name:
PLCB1
Uniprot ID:
Q9NQ66
Molecular weight:
138565.805
Enzyme Details
4. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4
General function:
Involved in calcium ion binding
Specific function:
The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. This form has a role in retina signal transduction.
Gene Name:
PLCB4
Uniprot ID:
Q15147
Molecular weight:
136105.065
Enzyme Details
5. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-2
General function:
Involved in calcium ion binding
Specific function:
The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
Gene Name:
PLCB2
Uniprot ID:
Q00722
Molecular weight:
134023.21
Enzyme Details
6. Diacylglycerol kinase gamma
General function:
Involved in diacylglycerol kinase activity
Specific function:
Reverses the normal flow of glycerolipid biosynthesis by phosphorylating diacylglycerol back to phosphatidic acid
Gene Name:
DGKG
Uniprot ID:
P49619
Molecular weight:
89095.3
Enzyme Details
7. Hepatic triacylglycerol lipase
General function:
Involved in catalytic activity
Specific function:
Hepatic lipase has the capacity to catalyze hydrolysis of phospholipids, mono-, di-, and triglycerides, and acyl-CoA thioesters. It is an important enzyme in HDL metabolism. Hepatic lipase binds heparin.
Gene Name:
LIPC
Uniprot ID:
P11150
Molecular weight:
55914.1
Enzyme Details
8. Lysosomal acid lipase/cholesteryl ester hydrolase
General function:
Involved in lipid metabolic process
Specific function:
Crucial for the intracellular hydrolysis of cholesteryl esters and triglycerides that have been internalized via receptor-mediated endocytosis of lipoprotein particles. Important in mediating the effect of LDL (low density lipoprotein) uptake on suppression of hydroxymethylglutaryl-CoA reductase and activation of endogenous cellular cholesteryl ester formation.
Gene Name:
LIPA
Uniprot ID:
P38571
Molecular weight:
45418.71
Enzyme Details
9. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3
General function:
Involved in calcium ion binding
Specific function:
The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
Gene Name:
PLCB3
Uniprot ID:
Q01970
Molecular weight:
138797.725
Enzyme Details
10. Inactive pancreatic lipase-related protein 1
General function:
Involved in catalytic activity
Specific function:
May function as inhibitor of dietary triglyceride digestion. Lacks detectable lipase activity towards triglycerides, diglycerides, phosphatidylcholine, galactolipids or cholesterol esters (in vitro) (By similarity).
Gene Name:
PNLIPRP1
Uniprot ID:
P54315
Molecular weight:
Not Available

Transporters

Enzyme Details
1. Long-chain fatty acid transport protein 1
General function:
Lipid transport and metabolism
Specific function:
Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. The LFCA import appears to be hormone-regulated in a tissue-specific manner. In adipocytes, but not myocytes, insulin induces a rapid translocation of FATP1 from intracellular compartments to the plasma membrane, paralleled by increased LFCA uptake. May act directly as a bona fide transporter, or alternatively, in a cytoplasmic or membrane- associated multimeric protein complex to trap and draw fatty acids towards accumulation. Plays a pivotal role in regulating available LFCA substrates from exogenous sources in tissues undergoing high levels of beta-oxidation or triglyceride synthesis. May be involved in regulation of cholesterol metabolism. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids
Gene Name:
SLC27A1
Uniprot ID:
Q6PCB7
Molecular weight:
71107.5

Only showing the first 10 proteins. There are 132 proteins in total.

Show all enzymes and transporters