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Identification Taxonomy Ontology Physical properties Spectra Biological properties Concentrations Links References enzymes (131)transporters (1) Show 132 proteins XML

enzymes (131)transporters (1) Show 132 proteins

Record Information

Version

5.0

Status

Predicted

Creation Date

2021-09-19 15:52:56 UTC

Update Date

2022-11-30 20:10:45 UTC

HMDB ID

HMDB0298401

Secondary Accession Numbers

None

Metabolite Identification

Common Name

DG(5-iso PGF2VI/0:0/i-12:0)

Description

DG(5-iso PGF2VI/0:0/i-12:0) belongs to the family of Diacylglycerols. These are glycerolipids lipids containing a common glycerol backbone to which at least one fatty acyl group is esterified. It is involved in the phospholipid metabolic pathway.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv1652309192117532D          

 41 41  0  0  1  0            999 V2000
    2.9784   -2.6088    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2639   -2.1963    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2639   -1.3713    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5494   -2.6088    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5494   -3.4338    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8350   -3.8463    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1205   -3.4338    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5940   -3.8463    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6802   -4.6668    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0671   -5.2188    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4872   -4.8383    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8997   -4.1238    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.7202   -4.0376    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3476   -3.5107    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.5192   -2.7038    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9061   -2.1517    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0776   -1.3448    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.8622   -1.0898    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4645   -0.7927    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6360    0.0142    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0229    0.5663    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1945    1.3732    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4186    1.9253    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6929   -2.1963    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4073   -2.6088    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.1218   -2.1963    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8363   -2.6088    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.5507   -2.1963    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5507   -1.3713    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.2652   -2.6088    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9797   -2.1963    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6941   -2.6088    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4086   -2.1963    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1231   -2.6088    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8376   -2.1963    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.5520   -2.6088    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.2665   -2.1963    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.9810   -2.6088    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.6954   -2.1963    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.9810   -3.4338    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4073   -3.4338    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  8  7  1  6  0  0  0
  8  9  1  0  0  0  0
  9 10  1  1  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  1  0  0  0
 12 14  1  0  0  0  0
  8 14  1  0  0  0  0
 14 15  1  6  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  6  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
  1 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  2  0  0  0  0
 28 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 38 40  1  0  0  0  0
 25 41  1  6  0  0  0
M  END

HMDB0298401
     RDKit          3D
DG(5-iso PGF2VI/0:0/i-12:0)
 99 99  0  0  0  0  0  0  0  0999 V2000
    7.9696    3.8041    1.5665 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0719    3.1009    0.7672 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4761    1.7826    0.2425 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4640    1.0259   -0.5557 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0602   -0.2845   -1.1244 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7224   -1.3651   -0.1730 C   0  0  1  0  0  0  0  0  0  0  0  0
    9.8523   -1.5818    0.6584 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.5243   -1.2331    0.6751 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2996   -1.5020    0.2170 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0192   -1.4295    0.9274 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.1093   -0.3142    0.4191 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.0454   -0.2897   -1.0956 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5347   -1.5270   -1.6499 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4562   -1.6521   -2.3890 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6092   -0.5202   -2.7542 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2061   -0.7495   -2.2282 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6901    0.0876   -2.3798 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0406   -1.9263   -1.5723 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2639   -2.3009   -1.0274 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3311   -2.3734   -2.0702 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.9458   -3.3090   -3.0402 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6431   -2.7856   -1.4244 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0544   -1.9022   -0.4166 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3177   -0.5765   -0.5448 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1862   -0.0486   -1.6790 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7545    0.3034    0.5760 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0127   -0.4382    1.8379 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0370   -1.4892    1.8202 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4312   -1.0168    1.5083 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9709   -0.0483    2.4963 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.3421    0.3599    2.2915 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9690    1.2046    1.3221 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8930    1.1486   -0.1333 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.6277    1.6074   -0.7985 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7324    1.4387   -2.3211 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5033    3.1434   -0.6137 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8041    0.9089    0.9647 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.8511    1.9286    1.0274 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2535    0.4820    2.3439 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1960   -1.0203    2.3628 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.0521   -1.4515    3.0979 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.4401    3.0271    2.1585 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4049    4.5037    2.3003 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2864    4.3761    0.9167 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3416    3.7853   -0.0360 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.8961    2.9101    1.4794 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0829    1.2720    1.1195 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6290    2.1202   -0.4266 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.8430    1.7323   -1.3578 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.3811    0.9057    0.1015 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.9726   -0.6635   -1.7026 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2641   -0.1663   -1.9178 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6361   -2.3629   -0.7580 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.9672   -2.5472    0.8505 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5992   -0.9168    1.7118 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3190   -1.8175   -0.8577 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4618   -2.4147    0.8644 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1387   -0.4167    0.8956 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0991   -0.1239   -1.4710 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5200    0.6332   -1.3606 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0979   -2.4645   -1.4363 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1567   -2.6686   -2.7666 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9121    0.4304   -2.3018 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4530   -0.4294   -3.8602 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5264   -1.5537   -0.2304 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1484   -3.2659   -0.4776 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4602   -1.3657   -2.5185 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2797   -4.2005   -2.7434 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4588   -3.7960   -0.9810 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3779   -2.9337   -2.2334 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6371    0.8730    0.2777 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9151    1.0240    0.8002 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0226   -0.8179    2.2098 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2874    0.3513    2.6066 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0557   -2.0941    2.7778 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7865   -2.2597    1.0319 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4880   -0.7368    0.4617 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0696   -1.9668    1.6658 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8269   -0.4893    3.5456 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3277    0.8815    2.5664 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7290    0.7554    3.3479 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9410   -0.6708    2.3600 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7062    2.3022    1.6328 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.1146    1.2685    1.6237 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7164    1.8118   -0.5458 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.1853    0.1349   -0.5257 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7629    1.1362   -0.3918 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2919    2.3102   -2.8259 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7576    1.1952   -2.6423 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0751    0.5696   -2.5498 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5267    3.5357   -0.8482 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2322    3.2892    0.4461 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7586    3.5384   -1.3063 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6589    1.1824    0.3200 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1673    2.7755    0.6321 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2660    0.8831    2.6031 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5033    0.8461    3.1081 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0980   -1.4824    2.7864 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0386   -0.9263    3.9130 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 20 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  2  0
 24 26  1  0
 26 27  1  0
 27 28  1  0
 28 29  1  0
 29 30  1  0
 30 31  1  0
 31 32  1  0
 32 33  1  0
 33 34  1  0
 34 35  1  0
 34 36  1  0
 11 37  1  0
 37 38  1  0
 37 39  1  0
 39 40  1  0
 40 41  1  0
 40 10  1  0
  1 42  1  0
  1 43  1  0
  1 44  1  0
  2 45  1  0
  2 46  1  0
  3 47  1  0
  3 48  1  0
  4 49  1  0
  4 50  1  0
  5 51  1  0
  5 52  1  0
  6 53  1  6
  7 54  1  0
  8 55  1  0
  9 56  1  0
 10 57  1  1
 11 58  1  1
 12 59  1  0
 12 60  1  0
 13 61  1  0
 14 62  1  0
 15 63  1  0
 15 64  1  0
 19 65  1  0
 19 66  1  0
 20 67  1  6
 21 68  1  0
 22 69  1  0
 22 70  1  0
 26 71  1  0
 26 72  1  0
 27 73  1  0
 27 74  1  0
 28 75  1  0
 28 76  1  0
 29 77  1  0
 29 78  1  0
 30 79  1  0
 30 80  1  0
 31 81  1  0
 31 82  1  0
 32 83  1  0
 32 84  1  0
 33 85  1  0
 33 86  1  0
 34 87  1  0
 35 88  1  0
 35 89  1  0
 35 90  1  0
 36 91  1  0
 36 92  1  0
 36 93  1  0
 37 94  1  6
 38 95  1  0
 39 96  1  0
 39 97  1  0
 40 98  1  1
 41 99  1  0
M  END


  Mrv1652309192117532D          

 41 41  0  0  1  0            999 V2000
    2.9784   -2.6088    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2639   -2.1963    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2639   -1.3713    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5494   -2.6088    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5494   -3.4338    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8350   -3.8463    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1205   -3.4338    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5940   -3.8463    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
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    4.4073   -2.6088    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
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   10.8376   -2.1963    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.5520   -2.6088    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.2665   -2.1963    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   13.6954   -2.1963    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
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  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  8  7  1  6  0  0  0
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  9 10  1  1  0  0  0
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 11 12  1  0  0  0  0
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  8 14  1  0  0  0  0
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 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
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  1 24  1  0  0  0  0
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 25 26  1  0  0  0  0
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 27 28  1  0  0  0  0
 28 29  2  0  0  0  0
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 31 32  1  0  0  0  0
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 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
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 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 38 40  1  0  0  0  0
 25 41  1  6  0  0  0
M  END
> <DATABASE_ID>
HMDB0298401

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCC[C@@H](O)\C=C\[C@H]1[C@H](O)C[C@H](O)[C@H]1C\C=C/CC(=O)OC[C@@H](O)COC(=O)CCCCCCCCC(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C33H58O8/c1-4-5-10-16-26(34)20-21-29-28(30(36)22-31(29)37)17-13-14-19-33(39)41-24-27(35)23-40-32(38)18-12-9-7-6-8-11-15-25(2)3/h13-14,20-21,25-31,34-37H,4-12,15-19,22-24H2,1-3H3/b14-13-,21-20+/t26-,27+,28+,29-,30+,31-/m1/s1

> <INCHI_KEY>
HXHPWZMVGRHMBS-QHBLPWAYSA-N

> <FORMULA>
C33H58O8

> <MOLECULAR_WEIGHT>
582.819

> <EXACT_MASS>
582.413168828

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
99

> <JCHEM_AVERAGE_POLARIZABILITY>
70.4252305735478

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S)-3-{[(3Z)-5-[(1S,2R,3R,5S)-3,5-dihydroxy-2-[(1E,3R)-3-hydroxyoct-1-en-1-yl]cyclopentyl]pent-3-enoyl]oxy}-2-hydroxypropyl 10-methylundecanoate

> <ALOGPS_LOGP>
5.34

> <JCHEM_LOGP>
5.532603863

> <ALOGPS_LOGS>
-5.17

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.55646041483299

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.577746238881982

> <JCHEM_PKA_STRONGEST_BASIC>
-1.6263116642838646

> <JCHEM_POLAR_SURFACE_AREA>
133.52

> <JCHEM_REFRACTIVITY>
163.42760000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
25

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
3.97e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-3-{[(3Z)-5-[(1S,2R,3R,5S)-3,5-dihydroxy-2-[(1E,3R)-3-hydroxyoct-1-en-1-yl]cyclopentyl]pent-3-enoyl]oxy}-2-hydroxypropyl 10-methylundecanoate

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0298401
     RDKit          3D
DG(5-iso PGF2VI/0:0/i-12:0)
 99 99  0  0  0  0  0  0  0  0999 V2000
    7.9696    3.8041    1.5665 C   0  0  0  0  0  0  0  0  0  0  0  0
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 35 88  1  0
 35 89  1  0
 35 90  1  0
 36 91  1  0
 36 92  1  0
 36 93  1  0
 37 94  1  6
 38 95  1  0
 39 96  1  0
 39 97  1  0
 40 98  1  1
 41 99  1  0
M  END

HEADER    PROTEIN                                 19-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   19-SEP-21         0                                  
HETATM    1  O   UNK     0       5.560  -4.870   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       4.226  -4.100   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       4.226  -2.560   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       2.892  -4.870   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.892  -6.410   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.559  -7.180   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.225  -6.410   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -1.109  -7.180   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -1.270  -8.711   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      -0.125  -9.742   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      -2.776  -9.032   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -3.546  -7.698   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      -5.078  -7.537   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0      -2.516  -6.553   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -2.836  -5.047   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -1.691  -4.017   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -2.012  -2.510   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      -3.476  -2.034   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0      -0.867  -1.480   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -1.187   0.027   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -0.043   1.057   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -0.363   2.563   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       0.781   3.594   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       6.893  -4.100   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       8.227  -4.870   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       9.561  -4.100   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      10.894  -4.870   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0      12.228  -4.100   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      12.228  -2.560   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0      13.562  -4.870   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      14.895  -4.100   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      16.229  -4.870   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      17.563  -4.100   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      18.896  -4.870   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      20.230  -4.100   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      21.564  -4.870   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      22.897  -4.100   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      24.231  -4.870   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      25.565  -4.100   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      24.231  -6.410   0.000  0.00  0.00           C+0
HETATM   41  O   UNK     0       8.227  -6.410   0.000  0.00  0.00           O+0
CONECT    1    2   24                                                       
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   14                                                  
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12    8   15                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22                                                            
CONECT   24    1   25                                                       
CONECT   25   24   26   41                                                  
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39   40                                                  
CONECT   39   38                                                            
CONECT   40   38                                                            
CONECT   41   25                                                            
MASTER        0    0    0    0    0    0    0    0   41    0   82    0
END

COMPND    HMDB0298401
HETATM    1  C1  UNL     1       7.970   3.804   1.567  1.00  0.00           C  
HETATM    2  C2  UNL     1       9.072   3.101   0.767  1.00  0.00           C  
HETATM    3  C3  UNL     1       8.476   1.783   0.243  1.00  0.00           C  
HETATM    4  C4  UNL     1       9.464   1.026  -0.556  1.00  0.00           C  
HETATM    5  C5  UNL     1       9.060  -0.285  -1.124  1.00  0.00           C  
HETATM    6  C6  UNL     1       8.722  -1.365  -0.173  1.00  0.00           C  
HETATM    7  O1  UNL     1       9.852  -1.582   0.658  1.00  0.00           O  
HETATM    8  C7  UNL     1       7.524  -1.233   0.675  1.00  0.00           C  
HETATM    9  C8  UNL     1       6.300  -1.502   0.217  1.00  0.00           C  
HETATM   10  C9  UNL     1       5.019  -1.429   0.927  1.00  0.00           C  
HETATM   11  C10 UNL     1       4.109  -0.314   0.419  1.00  0.00           C  
HETATM   12  C11 UNL     1       4.045  -0.290  -1.096  1.00  0.00           C  
HETATM   13  C12 UNL     1       3.535  -1.527  -1.650  1.00  0.00           C  
HETATM   14  C13 UNL     1       2.456  -1.652  -2.389  1.00  0.00           C  
HETATM   15  C14 UNL     1       1.609  -0.520  -2.754  1.00  0.00           C  
HETATM   16  C15 UNL     1       0.206  -0.750  -2.228  1.00  0.00           C  
HETATM   17  O2  UNL     1      -0.690   0.088  -2.380  1.00  0.00           O  
HETATM   18  O3  UNL     1      -0.041  -1.926  -1.572  1.00  0.00           O  
HETATM   19  C16 UNL     1      -1.264  -2.301  -1.027  1.00  0.00           C  
HETATM   20  C17 UNL     1      -2.331  -2.373  -2.070  1.00  0.00           C  
HETATM   21  O4  UNL     1      -1.946  -3.309  -3.040  1.00  0.00           O  
HETATM   22  C18 UNL     1      -3.643  -2.786  -1.424  1.00  0.00           C  
HETATM   23  O5  UNL     1      -4.054  -1.902  -0.417  1.00  0.00           O  
HETATM   24  C19 UNL     1      -4.318  -0.576  -0.545  1.00  0.00           C  
HETATM   25  O6  UNL     1      -4.186  -0.049  -1.679  1.00  0.00           O  
HETATM   26  C20 UNL     1      -4.754   0.303   0.576  1.00  0.00           C  
HETATM   27  C21 UNL     1      -5.013  -0.438   1.838  1.00  0.00           C  
HETATM   28  C22 UNL     1      -6.037  -1.489   1.820  1.00  0.00           C  
HETATM   29  C23 UNL     1      -7.431  -1.017   1.508  1.00  0.00           C  
HETATM   30  C24 UNL     1      -7.971  -0.048   2.496  1.00  0.00           C  
HETATM   31  C25 UNL     1      -9.342   0.360   2.291  1.00  0.00           C  
HETATM   32  C26 UNL     1      -9.969   1.205   1.322  1.00  0.00           C  
HETATM   33  C27 UNL     1      -9.893   1.149  -0.133  1.00  0.00           C  
HETATM   34  C28 UNL     1      -8.628   1.607  -0.798  1.00  0.00           C  
HETATM   35  C29 UNL     1      -8.732   1.439  -2.321  1.00  0.00           C  
HETATM   36  C30 UNL     1      -8.503   3.143  -0.614  1.00  0.00           C  
HETATM   37  C31 UNL     1       4.804   0.909   0.965  1.00  0.00           C  
HETATM   38  O7  UNL     1       3.851   1.929   1.027  1.00  0.00           O  
HETATM   39  C32 UNL     1       5.254   0.482   2.344  1.00  0.00           C  
HETATM   40  C33 UNL     1       5.196  -1.020   2.363  1.00  0.00           C  
HETATM   41  O8  UNL     1       4.052  -1.451   3.098  1.00  0.00           O  
HETATM   42  H1  UNL     1       7.440   3.027   2.159  1.00  0.00           H  
HETATM   43  H2  UNL     1       8.405   4.504   2.300  1.00  0.00           H  
HETATM   44  H3  UNL     1       7.286   4.376   0.917  1.00  0.00           H  
HETATM   45  H4  UNL     1       9.342   3.785  -0.036  1.00  0.00           H  
HETATM   46  H5  UNL     1       9.896   2.910   1.479  1.00  0.00           H  
HETATM   47  H6  UNL     1       8.083   1.272   1.120  1.00  0.00           H  
HETATM   48  H7  UNL     1       7.629   2.120  -0.427  1.00  0.00           H  
HETATM   49  H8  UNL     1       9.843   1.732  -1.358  1.00  0.00           H  
HETATM   50  H9  UNL     1      10.381   0.906   0.101  1.00  0.00           H  
HETATM   51  H10 UNL     1       9.973  -0.664  -1.703  1.00  0.00           H  
HETATM   52  H11 UNL     1       8.264  -0.166  -1.918  1.00  0.00           H  
HETATM   53  H12 UNL     1       8.636  -2.363  -0.758  1.00  0.00           H  
HETATM   54  H13 UNL     1       9.967  -2.547   0.851  1.00  0.00           H  
HETATM   55  H14 UNL     1       7.599  -0.917   1.712  1.00  0.00           H  
HETATM   56  H15 UNL     1       6.319  -1.818  -0.858  1.00  0.00           H  
HETATM   57  H16 UNL     1       4.462  -2.415   0.864  1.00  0.00           H  
HETATM   58  H17 UNL     1       3.139  -0.417   0.896  1.00  0.00           H  
HETATM   59  H18 UNL     1       5.099  -0.124  -1.471  1.00  0.00           H  
HETATM   60  H19 UNL     1       3.520   0.633  -1.361  1.00  0.00           H  
HETATM   61  H20 UNL     1       4.098  -2.465  -1.436  1.00  0.00           H  
HETATM   62  H21 UNL     1       2.157  -2.669  -2.767  1.00  0.00           H  
HETATM   63  H22 UNL     1       1.912   0.430  -2.302  1.00  0.00           H  
HETATM   64  H23 UNL     1       1.453  -0.429  -3.860  1.00  0.00           H  
HETATM   65  H24 UNL     1      -1.526  -1.554  -0.230  1.00  0.00           H  
HETATM   66  H25 UNL     1      -1.148  -3.266  -0.478  1.00  0.00           H  
HETATM   67  H26 UNL     1      -2.460  -1.366  -2.518  1.00  0.00           H  
HETATM   68  H27 UNL     1      -2.280  -4.201  -2.743  1.00  0.00           H  
HETATM   69  H28 UNL     1      -3.459  -3.796  -0.981  1.00  0.00           H  
HETATM   70  H29 UNL     1      -4.378  -2.934  -2.233  1.00  0.00           H  
HETATM   71  H30 UNL     1      -5.637   0.873   0.278  1.00  0.00           H  
HETATM   72  H31 UNL     1      -3.915   1.024   0.800  1.00  0.00           H  
HETATM   73  H32 UNL     1      -4.023  -0.818   2.210  1.00  0.00           H  
HETATM   74  H33 UNL     1      -5.287   0.351   2.607  1.00  0.00           H  
HETATM   75  H34 UNL     1      -6.056  -2.094   2.778  1.00  0.00           H  
HETATM   76  H35 UNL     1      -5.786  -2.260   1.032  1.00  0.00           H  
HETATM   77  H36 UNL     1      -7.488  -0.737   0.462  1.00  0.00           H  
HETATM   78  H37 UNL     1      -8.070  -1.967   1.666  1.00  0.00           H  
HETATM   79  H38 UNL     1      -7.827  -0.489   3.546  1.00  0.00           H  
HETATM   80  H39 UNL     1      -7.328   0.881   2.566  1.00  0.00           H  
HETATM   81  H40 UNL     1      -9.729   0.755   3.348  1.00  0.00           H  
HETATM   82  H41 UNL     1      -9.941  -0.671   2.360  1.00  0.00           H  
HETATM   83  H42 UNL     1      -9.706   2.302   1.633  1.00  0.00           H  
HETATM   84  H43 UNL     1     -11.115   1.269   1.624  1.00  0.00           H  
HETATM   85  H44 UNL     1     -10.716   1.812  -0.546  1.00  0.00           H  
HETATM   86  H45 UNL     1     -10.185   0.135  -0.526  1.00  0.00           H  
HETATM   87  H46 UNL     1      -7.763   1.136  -0.392  1.00  0.00           H  
HETATM   88  H47 UNL     1      -8.292   2.310  -2.826  1.00  0.00           H  
HETATM   89  H48 UNL     1      -9.758   1.195  -2.642  1.00  0.00           H  
HETATM   90  H49 UNL     1      -8.075   0.570  -2.550  1.00  0.00           H  
HETATM   91  H50 UNL     1      -9.527   3.536  -0.848  1.00  0.00           H  
HETATM   92  H51 UNL     1      -8.232   3.289   0.446  1.00  0.00           H  
HETATM   93  H52 UNL     1      -7.759   3.538  -1.306  1.00  0.00           H  
HETATM   94  H53 UNL     1       5.659   1.182   0.320  1.00  0.00           H  
HETATM   95  H54 UNL     1       4.167   2.776   0.632  1.00  0.00           H  
HETATM   96  H55 UNL     1       6.266   0.883   2.603  1.00  0.00           H  
HETATM   97  H56 UNL     1       4.503   0.846   3.108  1.00  0.00           H  
HETATM   98  H57 UNL     1       6.098  -1.482   2.786  1.00  0.00           H  
HETATM   99  H58 UNL     1       4.039  -0.926   3.913  1.00  0.00           H  
CONECT    1    2   42   43   44
CONECT    2    3   45   46
CONECT    3    4   47   48
CONECT    4    5   49   50
CONECT    5    6   51   52
CONECT    6    7    8   53
CONECT    7   54
CONECT    8    9    9   55
CONECT    9   10   56
CONECT   10   11   40   57
CONECT   11   12   37   58
CONECT   12   13   59   60
CONECT   13   14   14   61
CONECT   14   15   62
CONECT   15   16   63   64
CONECT   16   17   17   18
CONECT   18   19
CONECT   19   20   65   66
CONECT   20   21   22   67
CONECT   21   68
CONECT   22   23   69   70
CONECT   23   24
CONECT   24   25   25   26
CONECT   26   27   71   72
CONECT   27   28   73   74
CONECT   28   29   75   76
CONECT   29   30   77   78
CONECT   30   31   79   80
CONECT   31   32   81   82
CONECT   32   33   83   84
CONECT   33   34   85   86
CONECT   34   35   36   87
CONECT   35   88   89   90
CONECT   36   91   92   93
CONECT   37   38   39   94
CONECT   38   95
CONECT   39   40   96   97
CONECT   40   41   98
CONECT   41   99
END

HMDB0298401
     RDKit          3D
DG(5-iso PGF2VI/0:0/i-12:0)
 99 99  0  0  0  0  0  0  0  0999 V2000
    7.9696    3.8041    1.5665 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0719    3.1009    0.7672 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4761    1.7826    0.2425 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4640    1.0259   -0.5557 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0602   -0.2845   -1.1244 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7224   -1.3651   -0.1730 C   0  0  1  0  0  0  0  0  0  0  0  0
    9.8523   -1.5818    0.6584 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.5243   -1.2331    0.6751 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2996   -1.5020    0.2170 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0192   -1.4295    0.9274 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.1093   -0.3142    0.4191 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.0454   -0.2897   -1.0956 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5347   -1.5270   -1.6499 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4562   -1.6521   -2.3890 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6092   -0.5202   -2.7542 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2061   -0.7495   -2.2282 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6901    0.0876   -2.3798 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0406   -1.9263   -1.5723 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2639   -2.3009   -1.0274 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3311   -2.3734   -2.0702 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.9458   -3.3090   -3.0402 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6431   -2.7856   -1.4244 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0544   -1.9022   -0.4166 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3177   -0.5765   -0.5448 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1862   -0.0486   -1.6790 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7545    0.3034    0.5760 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0127   -0.4382    1.8379 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0370   -1.4892    1.8202 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4312   -1.0168    1.5083 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9709   -0.0483    2.4963 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.3421    0.3599    2.2915 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9690    1.2046    1.3221 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8930    1.1486   -0.1333 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.6277    1.6074   -0.7985 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7324    1.4387   -2.3211 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5033    3.1434   -0.6137 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8041    0.9089    0.9647 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.8511    1.9286    1.0274 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2535    0.4820    2.3439 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1960   -1.0203    2.3628 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.0521   -1.4515    3.0979 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.4401    3.0271    2.1585 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4049    4.5037    2.3003 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2864    4.3761    0.9167 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3416    3.7853   -0.0360 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.8961    2.9101    1.4794 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0829    1.2720    1.1195 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6290    2.1202   -0.4266 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.8430    1.7323   -1.3578 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.3811    0.9057    0.1015 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.9726   -0.6635   -1.7026 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2641   -0.1663   -1.9178 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6361   -2.3629   -0.7580 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.9672   -2.5472    0.8505 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5992   -0.9168    1.7118 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3190   -1.8175   -0.8577 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4618   -2.4147    0.8644 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1387   -0.4167    0.8956 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0991   -0.1239   -1.4710 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5200    0.6332   -1.3606 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0979   -2.4645   -1.4363 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1567   -2.6686   -2.7666 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9121    0.4304   -2.3018 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4530   -0.4294   -3.8602 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5264   -1.5537   -0.2304 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1484   -3.2659   -0.4776 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4602   -1.3657   -2.5185 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2797   -4.2005   -2.7434 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4588   -3.7960   -0.9810 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3779   -2.9337   -2.2334 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6371    0.8730    0.2777 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9151    1.0240    0.8002 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0226   -0.8179    2.2098 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2874    0.3513    2.6066 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0557   -2.0941    2.7778 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7865   -2.2597    1.0319 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4880   -0.7368    0.4617 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0696   -1.9668    1.6658 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8269   -0.4893    3.5456 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3277    0.8815    2.5664 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7290    0.7554    3.3479 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9410   -0.6708    2.3600 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7062    2.3022    1.6328 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.1146    1.2685    1.6237 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7164    1.8118   -0.5458 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.1853    0.1349   -0.5257 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7629    1.1362   -0.3918 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2919    2.3102   -2.8259 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7576    1.1952   -2.6423 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0751    0.5696   -2.5498 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5267    3.5357   -0.8482 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2322    3.2892    0.4461 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7586    3.5384   -1.3063 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6589    1.1824    0.3200 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1673    2.7755    0.6321 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2660    0.8831    2.6031 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5033    0.8461    3.1081 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0980   -1.4824    2.7864 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0386   -0.9263    3.9130 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
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 14 15  1  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 20 22  1  0
 22 23  1  0
 23 24  1  0
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 24 26  1  0
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 33 34  1  0
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 11 37  1  0
 37 38  1  0
 37 39  1  0
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  1 42  1  0
  1 43  1  0
  1 44  1  0
  2 45  1  0
  2 46  1  0
  3 47  1  0
  3 48  1  0
  4 49  1  0
  4 50  1  0
  5 51  1  0
  5 52  1  0
  6 53  1  6
  7 54  1  0
  8 55  1  0
  9 56  1  0
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 35 88  1  0
 35 89  1  0
 35 90  1  0
 36 91  1  0
 36 92  1  0
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 37 94  1  6
 38 95  1  0
 39 96  1  0
 39 97  1  0
 40 98  1  1
 41 99  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
(2S)-3-{[(3Z)-5-[(1S,2R,3R,5S)-3,5-dihydroxy-2-[(1E,3R)-3-hydroxyoct-1-en-1-yl]cyclopentyl]pent-3-enoyl]oxy}-2-hydroxypropyl 10-methylundecanoic acid	Generator

Chemical Formula

C₃₃H₅₈O₈

Average Molecular Weight

582.819

Monoisotopic Molecular Weight

582.413168828

IUPAC Name

(2S)-3-{[(3Z)-5-[(1S,2R,3R,5S)-3,5-dihydroxy-2-[(1E,3R)-3-hydroxyoct-1-en-1-yl]cyclopentyl]pent-3-enoyl]oxy}-2-hydroxypropyl 10-methylundecanoate

Traditional Name

(2S)-3-{[(3Z)-5-[(1S,2R,3R,5S)-3,5-dihydroxy-2-[(1E,3R)-3-hydroxyoct-1-en-1-yl]cyclopentyl]pent-3-enoyl]oxy}-2-hydroxypropyl 10-methylundecanoate

CAS Registry Number

Not Available

SMILES

CCCCC[C@@H](O)\C=C\[C@H]1[C@H](O)C[C@H](O)[C@H]1C\C=C/CC(=O)OC[C@@H](O)COC(=O)CCCCCCCCC(C)C

InChI Identifier

InChI=1S/C33H58O8/c1-4-5-10-16-26(34)20-21-29-28(30(36)22-31(29)37)17-13-14-19-33(39)41-24-27(35)23-40-32(38)18-12-9-7-6-8-11-15-25(2)3/h13-14,20-21,25-31,34-37H,4-12,15-19,22-24H2,1-3H3/b14-13-,21-20+/t26-,27+,28+,29-,30+,31-/m1/s1

InChI Key

HXHPWZMVGRHMBS-QHBLPWAYSA-N

Chemical Taxonomy

Classification

Not classified

Ontology

Not Available

Endogenous (HMDB: HMDB0298401)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	5.34	ALOGPS
logP	5.53	ChemAxon
logS	-5.2	ALOGPS
pKa (Strongest Acidic)	13.58	ChemAxon
pKa (Strongest Basic)	-1.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	133.52 Å²	ChemAxon
Rotatable Bond Count	25	ChemAxon
Refractivity	163.43 m³·mol⁻¹	ChemAxon
Polarizability	70.43 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
AllCCS	[M+H]+	247.497	32859911
AllCCS	[M+H-H2O]+	246.756	32859911
AllCCS	[M+Na]+	248.329	32859911
AllCCS	[M+NH4]+	248.149	32859911
AllCCS	[M-H]-	234.389	32859911
AllCCS	[M+Na-2H]-	238.82	32859911
AllCCS	[M+HCOO]-	243.81	32859911
DeepCCS	[M+H]+	247.436	30932474
DeepCCS	[M-H]-	245.611	30932474
DeepCCS	[M-2H]-	278.855	30932474
DeepCCS	[M+Na]+	253.042	30932474

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Predicted by Siyang on May 30, 2022	18.6574 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	1.17 minutes	32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	4002.3 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	175.7 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	256.9 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	180.1 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	399.6 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	931.9 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	798.1 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	130.5 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	1776.8 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	790.5 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	2169.5 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	550.2 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	551.1 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	160.3 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	195.8 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	8.6 seconds	40023050

Predicted Kovats Retention Indices

Not Available

Spectra

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(5-iso PGF2VI/0:0/i-12:0) 10V, Positive-QTOF	splash10-00kb-2001090000-0554fc68b69fbf1132e4	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(5-iso PGF2VI/0:0/i-12:0) 20V, Positive-QTOF	splash10-05mk-9421460000-ebe041d46c2b412e8565	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(5-iso PGF2VI/0:0/i-12:0) 40V, Positive-QTOF	splash10-052f-9400000000-270282344547d0a6a5a6	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(5-iso PGF2VI/0:0/i-12:0) 10V, Negative-QTOF	splash10-01pk-0834960000-3524be717597f7162453	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(5-iso PGF2VI/0:0/i-12:0) 20V, Negative-QTOF	splash10-053s-3819220000-e14228c00786d068a7fb	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(5-iso PGF2VI/0:0/i-12:0) 40V, Negative-QTOF	splash10-01q9-2933200000-46c1a56ceab68ae280f5	2021-10-21	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Not Available

Only showing the first 10 proteins. There are 132 proteins in total.

Show all enzymes and transporters

Enzymes

Enzyme Details

1. Diacylglycerol kinase theta

General function:: Involved in diacylglycerol kinase activity
Specific function:: Phosphorylates diacylglycerol (DAG) to generate phosphatidic acid (PA). May regulate the activity of protein kinase C by controlling the balance between these two signaling lipids. Activated in the nucleus in response to alpha-thrombin and nerve growth factor. May be involved in cAMP- induced activation of NR5A1 and subsequent steroidogenic gene transcription by delivering PA as ligand for NR5A1. Acts synergistically with NR5A1 on CYP17 transcriptional activity
Gene Name:: DGKQ
Uniprot ID:: P52824
Molecular weight:: 101154.0

Enzyme Details

2. Pancreatic triacylglycerol lipase

General function:: Involved in catalytic activity
Specific function:: Not Available
Gene Name:: PNLIP
Uniprot ID:: P16233
Molecular weight:: 51156.48

Enzyme Details

3. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1

General function:: Involved in calcium ion binding
Specific function:: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
Gene Name:: PLCB1
Uniprot ID:: Q9NQ66
Molecular weight:: 138565.805

Enzyme Details

4. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4

General function:: Involved in calcium ion binding
Specific function:: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. This form has a role in retina signal transduction.
Gene Name:: PLCB4
Uniprot ID:: Q15147
Molecular weight:: 136105.065

Enzyme Details

5. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-2

General function:: Involved in calcium ion binding
Specific function:: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
Gene Name:: PLCB2
Uniprot ID:: Q00722
Molecular weight:: 134023.21

Enzyme Details

6. Diacylglycerol kinase gamma

General function:: Involved in diacylglycerol kinase activity
Specific function:: Reverses the normal flow of glycerolipid biosynthesis by phosphorylating diacylglycerol back to phosphatidic acid
Gene Name:: DGKG
Uniprot ID:: P49619
Molecular weight:: 89095.3

Enzyme Details

7. Hepatic triacylglycerol lipase

General function:: Involved in catalytic activity
Specific function:: Hepatic lipase has the capacity to catalyze hydrolysis of phospholipids, mono-, di-, and triglycerides, and acyl-CoA thioesters. It is an important enzyme in HDL metabolism. Hepatic lipase binds heparin.
Gene Name:: LIPC
Uniprot ID:: P11150
Molecular weight:: 55914.1

Enzyme Details

8. Lysosomal acid lipase/cholesteryl ester hydrolase

General function:: Involved in lipid metabolic process
Specific function:: Crucial for the intracellular hydrolysis of cholesteryl esters and triglycerides that have been internalized via receptor-mediated endocytosis of lipoprotein particles. Important in mediating the effect of LDL (low density lipoprotein) uptake on suppression of hydroxymethylglutaryl-CoA reductase and activation of endogenous cellular cholesteryl ester formation.
Gene Name:: LIPA
Uniprot ID:: P38571
Molecular weight:: 45418.71

Enzyme Details

9. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3

General function:: Involved in calcium ion binding
Specific function:: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
Gene Name:: PLCB3
Uniprot ID:: Q01970
Molecular weight:: 138797.725

Enzyme Details

10. Inactive pancreatic lipase-related protein 1

General function:: Involved in catalytic activity
Specific function:: May function as inhibitor of dietary triglyceride digestion. Lacks detectable lipase activity towards triglycerides, diglycerides, phosphatidylcholine, galactolipids or cholesterol esters (in vitro) (By similarity).
Gene Name:: PNLIPRP1
Uniprot ID:: P54315
Molecular weight:: Not Available

Transporters

Enzyme Details

1. Long-chain fatty acid transport protein 1

General function:: Lipid transport and metabolism
Specific function:: Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. The LFCA import appears to be hormone-regulated in a tissue-specific manner. In adipocytes, but not myocytes, insulin induces a rapid translocation of FATP1 from intracellular compartments to the plasma membrane, paralleled by increased LFCA uptake. May act directly as a bona fide transporter, or alternatively, in a cytoplasmic or membrane- associated multimeric protein complex to trap and draw fatty acids towards accumulation. Plays a pivotal role in regulating available LFCA substrates from exogenous sources in tissues undergoing high levels of beta-oxidation or triglyceride synthesis. May be involved in regulation of cholesterol metabolism. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids
Gene Name:: SLC27A1
Uniprot ID:: Q6PCB7
Molecular weight:: 71107.5

Only showing the first 10 proteins. There are 132 proteins in total.

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Showing metabocard for DG(5-iso PGF2VI/0:0/i-12:0) (HMDB0298401)

MOL for HMDB0298401 (DG(5-iso PGF2VI/0:0/i-12:0))

3D MOL for HMDB0298401 (DG(5-iso PGF2VI/0:0/i-12:0))

3D SDF for HMDB0298401 (DG(5-iso PGF2VI/0:0/i-12:0))

3D-SDF for HMDB0298401 (DG(5-iso PGF2VI/0:0/i-12:0))

PDB for HMDB0298401 (DG(5-iso PGF2VI/0:0/i-12:0))

3D PDB for HMDB0298401 (DG(5-iso PGF2VI/0:0/i-12:0))

SMILES for HMDB0298401 (DG(5-iso PGF2VI/0:0/i-12:0))

INCHI for HMDB0298401 (DG(5-iso PGF2VI/0:0/i-12:0))

Structure for HMDB0298401 (DG(5-iso PGF2VI/0:0/i-12:0))

3D Structure for HMDB0298401 (DG(5-iso PGF2VI/0:0/i-12:0))

Predicted Collision Cross Sections

Predicted Retention Times

Underivatized

Predicted Kovats Retention Indices

MS/MS Spectra

Enzymes

Transporters